Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 4.6e-67 258.1 160 100.0
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 6.9e-31 137.9 149 61.1
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 9.0e-31 137.5 152 61.8
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.4e-28 130.2 150 67.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 3.0e-26 122.5 148 49.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.1e-26 121.7 129 51.2
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 6.7e-26 121.3 143 51.0
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 6.7e-26 121.3 130 51.5
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.5e-25 120.2 144 55.6
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 5.6e-25 118.2 132 49.2
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 7.4e-25 117.9 136 52.9
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 9.6e-25 117.5 105 57.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.3e-24 117.1 148 49.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.7e-24 115.5 130 52.3
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.7e-24 115.5 110 57.3
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 6.2e-24 114.8 127 52.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 6.2e-24 114.8 149 49.0
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 6.2e-24 114.8 158 60.8
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 6.2e-24 114.8 156 50.6
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 8.1e-24 114.4 116 55.2
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 8.1e-24 114.4 147 63.3
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.4e-23 113.6 120 62.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.8e-23 113.2 116 67.2
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.1e-23 112.5 114 52.6
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.1e-23 112.5 112 50.9
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.0e-23 112.1 131 61.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 5.3e-23 111.7 116 60.3
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 5.3e-23 111.7 107 52.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 6.9e-23 111.3 104 64.4
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 6.9e-23 111.3 104 64.4
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 9.0e-23 110.9 144 49.3
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 9.0e-23 110.9 161 45.3
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.2e-22 110.5 113 53.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.0e-22 109.8 132 65.2
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 2.6e-22 109.4 116 51.7
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.4e-22 109.0 106 54.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.5e-22 108.6 152 52.6
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.8e-22 108.2 104 75.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 5.8e-22 108.2 141 58.9
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-21 107.1 106 53.8
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.3e-21 107.1 118 56.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.3e-21 107.1 116 68.1
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.7e-21 106.7 105 53.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.7e-21 106.7 132 46.2
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.2e-21 106.3 118 52.5
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.2e-21 106.3 118 52.5
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.9e-21 105.9 106 51.9
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.9e-21 105.9 118 51.7
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.9e-21 105.9 132 48.5
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 3.8e-21 105.5 142 45.8
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.9e-21 105.1 159 41.5
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.9e-21 105.1 107 52.3
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 4.9e-21 105.1 104 51.9
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.9e-21 105.1 116 64.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.9e-21 105.1 137 48.2
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.9e-21 105.1 158 43.0
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 6.4e-21 104.8 107 51.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 6.4e-21 104.8 102 56.9
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 8.4e-21 104.4 120 60.0
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.1e-20 104.0 116 50.0
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.1e-20 104.0 133 51.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.4e-20 103.6 114 48.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.9e-20 103.2 110 70.9
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.9e-20 103.2 119 51.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 3.2e-20 102.4 119 67.2
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.2e-20 102.1 117 60.7
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.2e-20 102.1 104 52.9
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 4.2e-20 102.1 144 44.4
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.2e-19 100.5 117 47.9
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.2e-19 100.5 149 45.6
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-19 100.1 108 55.6
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.1e-19 99.8 115 60.0
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 2.7e-19 99.4 106 58.5
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.6e-19 98.6 115 49.6
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.9e-19 97.8 113 54.0
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.0e-18 97.4 117 47.0
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.3e-18 97.1 117 45.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.8e-18 96.7 109 49.5
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.3e-18 96.3 108 50.0
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.3e-18 96.3 108 50.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.3e-18 96.3 117 46.2
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.3e-18 96.3 151 47.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-18 95.9 113 47.8
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-18 95.9 113 47.8
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 3.0e-18 95.9 143 49.7
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.0e-18 95.9 136 52.2
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-18 95.5 113 47.8
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.9e-18 95.5 105 51.4
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 5.1e-18 95.1 131 61.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 5.1e-18 95.1 147 40.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 5.1e-18 95.1 103 48.5
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.1e-18 95.1 102 51.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-18 94.7 113 47.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.7e-18 94.7 147 40.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 6.7e-18 94.7 120 60.0
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 8.7e-18 94.4 113 47.8
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 8.7e-18 94.4 113 58.4
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-17 93.6 113 46.0
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-17 93.6 113 46.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.5e-17 93.6 149 47.0
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.9e-17 93.2 116 47.4
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 2.5e-17 92.8 99 71.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.3e-17 92.0 155 47.1
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.3e-17 92.0 118 50.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-17 91.7 143 41.3
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-17 91.7 113 46.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 5.6e-17 91.7 113 46.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 7.4e-17 91.3 107 69.2
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 9.6e-17 90.9 99 48.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-16 90.5 137 43.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.6e-16 90.1 99 48.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.6e-16 90.1 147 47.6
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.1e-16 89.7 116 44.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.1e-16 89.7 96 50.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.8e-16 89.4 122 54.9
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.7e-16 89.0 118 44.9
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.2e-16 87.8 166 41.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.4e-15 86.3 119 53.8
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 4.0e-15 85.5 137 40.9
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.3e-15 85.1 115 44.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-15 85.1 135 40.7
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.2e-14 84.0 117 60.7
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.4e-14 82.4 123 60.2
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 7.6e-14 81.3 138 39.9
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-13 80.5 142 36.6
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-13 80.5 142 36.6
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.3e-13 80.5 108 48.1
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.3e-13 80.5 108 48.1
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.3e-13 80.5 113 42.5
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.7e-13 80.1 114 44.7
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-13 79.3 126 40.5
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.8e-13 79.0 152 38.8
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 3.8e-13 79.0 108 45.4
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 8.4e-13 77.8 121 41.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-12 77.4 126 39.7
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.5e-12 76.3 104 40.4
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-12 75.9 142 35.2
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 3.2e-12 75.9 148 37.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.2e-12 75.5 142 38.7
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.6e-11 73.6 57 54.4
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.1e-11 73.2 110 40.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.1e-11 73.2 117 43.6
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 7.9e-11 71.2 115 40.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 7.9e-11 71.2 116 38.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.3e-10 69.7 122 36.1
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.0e-10 69.3 148 33.1
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 3.0e-10 69.3 108 50.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.1e-10 68.6 99 42.4
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 5.7e-09 65.1 100 40.0
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 5.7e-09 65.1 100 39.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 7.4e-09 64.7 142 33.1
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 7.4e-09 64.7 142 33.1
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 7.4e-09 64.7 142 33.1
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.8e-08 62.8 100 39.0
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 4.8e-08 62.0 98 38.8
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 6.3e-08 61.6 101 39.6
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 1.1e-07 60.8 47 51.1
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-07 60.5 100 37.0
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-07 60.5 44 59.1
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 1.8e-07 60.1 47 51.1
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.1e-07 58.9 73 47.9
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 5.3e-07 58.5 53 49.1
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.2e-06 57.4 60 45.0
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 3.4e-06 55.8 46 47.8
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 5.9e-06 55.1 45 46.7
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 7.7e-06 54.7 44 47.7
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 1.0e-05 54.3 57 43.9


User provided reference genes

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