Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.6e-77 292.7 154 100.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 5.8e-27 124.8 168 49.4
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.0e-23 112.5 151 38.4
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 7.3e-22 107.8 161 42.2
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 9.6e-22 107.5 154 47.4
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.8e-21 105.1 121 52.1
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 6.2e-21 104.8 148 43.2
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 8.1e-21 104.4 151 41.1
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 1.4e-20 103.6 156 46.2
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.4e-20 102.8 157 44.6
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 4.0e-20 102.1 159 35.2
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.2e-19 100.5 162 40.1
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.0e-19 99.8 154 46.1
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 7.6e-19 97.8 119 52.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 7.6e-19 97.8 160 41.9
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.3e-18 97.1 160 45.6
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.3e-18 97.1 164 39.6
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 6.4e-18 94.7 135 48.9
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 6.4e-18 94.7 157 46.5
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.9e-17 93.2 152 46.1
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 2.4e-17 92.8 111 53.2
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.4e-17 92.8 161 47.8
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 4.2e-17 92.0 156 39.7
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 5.4e-17 91.7 137 46.0
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 5.4e-17 91.7 149 35.6
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 7.1e-17 91.3 174 43.1
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 9.3e-17 90.9 180 40.6
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-16 90.5 161 42.9
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-16 90.5 163 42.3
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-16 90.5 163 42.3
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.1e-16 89.7 151 35.8
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.5e-16 89.0 143 45.5
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 3.5e-16 89.0 138 47.8
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 3.5e-16 89.0 175 39.4
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.5e-16 89.0 54 68.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 6.0e-16 88.2 131 48.1
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.3e-15 87.0 112 52.7
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.3e-15 87.0 158 42.4
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.3e-15 87.0 122 48.4
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.3e-15 86.3 117 45.3
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 3.0e-15 85.9 118 49.2
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.9e-15 85.5 149 43.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 5.1e-15 85.1 137 35.0
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.1e-15 85.1 151 42.4
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.5e-14 83.6 154 37.0
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.9e-14 83.2 147 41.5
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 2.5e-14 82.8 156 35.9
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.5e-14 82.8 122 38.5
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 3.3e-14 82.4 153 42.5
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 5.6e-14 81.6 49 69.4
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 5.6e-14 81.6 126 47.6
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 7.3e-14 81.3 134 47.0
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 7.3e-14 81.3 141 44.7
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 9.6e-14 80.9 161 39.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.3e-13 80.5 193 35.8
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-13 80.5 104 54.8
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-13 80.5 104 54.8
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-13 80.5 104 54.8
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-13 80.5 104 54.8
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 2.1e-13 79.7 132 48.5
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 2.1e-13 79.7 194 29.4
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.1e-13 79.7 113 50.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 2.1e-13 79.7 155 34.2
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 2.1e-13 79.7 121 48.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.8e-13 79.3 54 55.6
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 3.6e-13 79.0 128 44.5
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 4.8e-13 78.6 51 62.7
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 6.2e-13 78.2 129 42.6
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 8.1e-13 77.8 159 39.0
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.8e-12 76.6 138 39.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.8e-12 76.6 113 48.7
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.4e-12 76.3 139 42.4
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 3.1e-12 75.9 181 34.8
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 5.3e-12 75.1 120 46.7
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 6.9e-12 74.7 54 57.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 6.9e-12 74.7 54 57.4
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 6.9e-12 74.7 54 57.4
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 6.9e-12 74.7 54 57.4
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 6.9e-12 74.7 54 57.4
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 6.9e-12 74.7 54 57.4
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 6.9e-12 74.7 105 47.6
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 9.0e-12 74.3 54 57.4
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 9.0e-12 74.3 54 57.4
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 9.0e-12 74.3 54 57.4
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 9.0e-12 74.3 54 57.4
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 9.0e-12 74.3 54 57.4
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 9.0e-12 74.3 145 42.8
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 9.0e-12 74.3 51 60.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.2e-11 73.9 135 39.3
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.2e-11 73.9 130 36.9
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.2e-11 73.9 162 37.0
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.2e-11 73.9 162 37.0
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.2e-11 73.9 116 40.5
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.5e-11 73.6 54 57.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.5e-11 73.6 54 50.0
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.5e-11 73.6 131 40.5
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 2.0e-11 73.2 54 57.4
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 2.0e-11 73.2 54 57.4
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.0e-11 73.2 51 58.8
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.6e-11 72.8 119 40.3
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-11 72.8 54 55.6
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.6e-11 72.8 54 55.6
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.6e-11 72.8 124 39.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 3.4e-11 72.4 54 55.6
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 7.6e-11 71.2 52 51.9
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.9e-11 70.9 149 40.9
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.3e-10 70.5 130 42.3
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.3e-10 70.5 138 42.0
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.3e-10 70.5 106 40.6
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.7e-10 70.1 129 41.9
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.7e-10 70.1 47 53.2
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.7e-10 70.1 99 35.4
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.7e-10 70.1 128 44.5
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.2e-10 69.7 125 36.8
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 2.9e-10 69.3 48 54.2
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.8e-10 68.9 120 42.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.9e-10 68.6 53 49.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.9e-10 68.6 123 39.0
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 6.4e-10 68.2 125 44.0
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 8.4e-10 67.8 126 42.1
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.1e-09 67.4 53 47.2
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.1e-09 67.4 53 47.2
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-09 67.4 128 38.3
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-09 67.4 140 35.0
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-09 67.4 179 35.2
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.4e-09 67.0 159 39.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-09 67.0 53 47.2
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-09 67.0 53 47.2
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.4e-09 67.0 113 46.0
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.9e-09 66.6 42 59.5
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.9e-09 66.6 53 50.9
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 4.2e-09 65.5 46 52.2
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 5.5e-09 65.1 50 54.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 7.1e-09 64.7 132 40.2
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 7.1e-09 64.7 55 47.3
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 7.1e-09 64.7 147 38.1
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.2e-08 63.9 161 36.0
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-08 63.9 143 32.2
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.2e-08 63.9 49 51.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.2e-08 63.9 52 48.1
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.2e-08 63.9 51 49.0
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.6e-08 63.5 166 33.1
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 2.1e-08 63.2 99 46.5
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.5e-08 62.4 109 45.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.5e-08 62.4 47 55.3
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 4.6e-08 62.0 45 51.1
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 7.9e-08 61.2 47 55.3
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.0e-07 60.8 171 29.8
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-07 60.5 47 53.2
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.8e-07 60.1 47 53.2
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.8e-07 60.1 47 53.2
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.9e-07 58.9 47 51.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.1e-06 57.4 46 50.0
Os09g0309600 Oryza sativa ssp. japonica HOM05D024720 ORTHO05D030308 7.4e-06 54.7 114 35.1
Zm00001eb097960 Zea mays HOM05D024720 ORTHO05D030308 7.4e-06 54.7 51 41.2


User provided reference genes

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