Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 3.7e-308 1060.8 584 100.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 9.0e-230 800.4 585 73.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 4.3e-216 755.0 584 66.8
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 3.1e-214 748.8 586 69.8
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 2.1e-210 736.1 513 70.8
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 8.8e-209 730.7 584 65.8
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 2.0e-208 729.6 584 66.8
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 4.3e-208 728.4 584 67.6
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.4e-206 723.4 511 72.8
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 3.4e-205 718.8 511 70.1
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.2e-203 712.2 584 66.6
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 5.5e-203 711.4 585 64.1
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 5.5e-203 711.4 584 66.3
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 1.2e-202 710.3 513 69.4
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.0e-201 707.2 585 66.5
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.4e-201 706.8 515 70.1
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 9.7e-200 700.7 584 64.4
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.7e-199 698.7 514 69.3
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.8e-198 696.4 500 69.8
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.4e-198 696.0 514 69.5
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 3.1e-198 695.7 513 67.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 4.1e-198 695.3 513 67.1
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 4.1e-198 695.3 513 68.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 5.3e-198 694.9 514 68.5
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 7.0e-198 694.5 510 67.5
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 7.0e-198 694.5 513 67.6
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 9.1e-198 694.1 513 67.1
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.2e-197 693.7 584 64.2
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.5e-197 691.8 514 68.9
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.0e-196 690.6 515 66.6
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.0e-196 690.6 516 67.1
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.7e-196 689.9 513 67.3
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.7e-196 689.9 514 67.9
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.7e-196 689.9 515 67.0
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.2e-196 689.5 585 64.4
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.2e-196 689.5 594 61.3
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 2.9e-196 689.1 513 66.9
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.8e-196 688.7 585 64.3
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 6.5e-196 688.0 515 67.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 6.5e-196 688.0 586 61.4
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.5e-196 688.0 513 68.8
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.9e-195 686.4 516 68.0
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.5e-195 686.0 513 66.7
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.5e-195 686.0 514 67.9
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-195 686.0 513 67.1
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 4.2e-195 685.3 585 62.1
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 4.2e-195 685.3 515 67.0
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 5.5e-195 684.9 514 67.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 5.5e-195 684.9 501 68.3
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 5.5e-195 684.9 513 67.1
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 7.2e-195 684.5 516 67.1
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.6e-194 683.3 515 65.8
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.7e-194 682.6 513 66.7
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.7e-194 682.6 514 67.3
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 3.6e-194 682.2 585 61.2
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.7e-194 681.8 585 63.9
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 4.7e-194 681.8 516 67.4
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 6.1e-194 681.4 585 61.2
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 6.1e-194 681.4 513 67.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 8.0e-194 681.0 506 67.6
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 1.0e-193 680.6 500 67.6
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.4e-193 680.2 514 66.9
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.3e-193 679.5 513 66.7
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.2e-193 678.3 513 66.5
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 6.7e-193 677.9 513 66.1
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 8.8e-193 677.6 515 67.0
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 4.4e-192 675.2 513 65.9
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.4e-192 675.2 514 66.9
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 5.7e-192 674.9 588 61.6
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.7e-191 673.3 513 65.1
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.8e-191 672.5 513 65.5
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 4.8e-191 671.8 513 65.3
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 1.8e-190 669.8 512 65.4
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 3.1e-190 669.1 514 66.3
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 4.1e-190 668.7 514 66.3
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.3e-190 668.3 513 66.1
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 9.1e-190 667.5 513 64.9
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 3.5e-189 665.6 516 65.5
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 7.7e-189 664.5 587 60.1
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 1.0e-188 664.1 514 64.6
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 2.9e-188 662.5 583 61.4
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 6.5e-188 661.4 500 66.2
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.2e-187 658.7 584 61.5
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 9.4e-187 657.5 511 65.6
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 1.6e-186 656.8 515 65.4
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.1e-186 656.4 585 60.3
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 2.0e-184 649.8 572 63.3
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 2.8e-183 646.0 513 62.8
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 5.3e-182 641.7 514 64.8
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.0e-180 637.5 514 63.2
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.2e-179 632.5 587 59.5
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.2e-178 630.6 584 60.3
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 2.1e-178 629.8 516 63.0
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.0e-177 627.5 515 63.5
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.8e-177 626.7 430 71.6
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 5.2e-177 625.2 513 61.6
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 8.8e-177 624.4 517 63.4
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.2e-176 624.0 513 62.4
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 3.4e-176 622.5 521 62.0
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.5e-176 621.3 464 67.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 3.7e-175 619.0 519 62.4
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 4.8e-175 618.6 513 61.2
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.4e-174 616.3 513 61.2
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 3.1e-174 615.9 516 62.6
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.2e-173 614.0 516 62.4
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.6e-173 613.6 513 60.0
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.6e-173 613.6 513 60.8
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.6e-173 613.6 517 61.3
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.6e-173 613.6 585 56.9
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 5.9e-173 611.7 513 61.0
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.4e-169 600.5 517 61.3
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 3.3e-163 579.3 424 67.9
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 5.6e-163 578.6 516 57.0
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 5.4e-158 562.0 518 57.1
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 3.5e-157 559.3 520 55.4
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 3.3e-155 552.7 352 75.6
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 2.4e-150 536.6 516 54.8
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 3.0e-148 529.6 513 57.3
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.9e-147 526.9 385 67.0
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.9e-143 512.3 436 58.5
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 7.3e-131 471.9 485 50.9
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 1.8e-129 467.2 439 52.4
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.3e-124 450.3 419 55.6
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.3e-116 424.5 458 48.3
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 8.7e-116 421.8 258 76.7
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 1.1e-115 421.4 535 42.1
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 6.5e-111 405.6 412 53.9
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 2.6e-104 383.6 443 45.8
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 3.2e-102 376.7 461 48.8
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-101 374.8 574 43.4
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.9e-95 353.6 512 43.8
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.2e-88 331.6 322 56.8
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.2e-85 321.6 484 37.6
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.1e-83 315.1 312 51.0
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 3.1e-73 280.4 383 44.4
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 2.6e-67 260.8 457 35.7
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 3.5e-64 250.4 326 39.9
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 6.1e-61 239.6 263 53.6
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 7.3e-46 189.5 517 31.5
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 4.0e-36 157.1 242 41.7
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.4e-33 148.7 586 23.4
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 3.5e-24 117.5 169 45.0
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 2.7e-16 91.3 92 57.6
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 1.9e-09 68.6 88 46.6


User provided reference genes

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