Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.3e-185 652.1 345 100.0
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.0e-95 354.4 387 59.2
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 3.3e-62 243.0 368 47.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.3e-60 236.9 378 46.3
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.6e-59 233.4 358 45.8
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.2e-57 226.5 356 46.3
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 4.1e-57 226.1 346 47.1
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.1e-57 225.3 368 46.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 9.2e-57 224.9 303 52.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.7e-56 223.4 298 51.3
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 4.6e-56 222.6 308 51.9
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 6.0e-56 222.2 384 46.6
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.0e-56 222.2 374 48.1
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.0e-56 222.2 369 45.8
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 7.8e-56 221.9 296 52.0
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-55 221.1 369 46.9
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.3e-55 221.1 369 46.9
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.3e-55 220.3 363 48.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.3e-55 220.3 369 46.6
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.3e-55 220.3 308 51.6
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 3.0e-55 219.9 369 46.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.1e-55 219.2 371 45.0
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-53 214.5 371 45.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-53 214.5 371 45.0
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.2e-53 214.5 370 46.5
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 4.7e-53 212.6 378 44.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 8.1e-53 211.8 362 45.3
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.1e-52 211.5 354 46.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.1e-52 211.5 361 44.6
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.1e-52 211.5 371 45.6
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.4e-52 211.1 373 44.5
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 3.1e-52 209.9 365 44.1
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.0e-52 209.5 363 42.1
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 4.0e-52 209.5 375 44.0
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 6.8e-52 208.8 374 44.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.5e-51 207.6 370 42.2
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.6e-51 205.3 353 44.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.6e-51 205.3 353 44.8
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 9.9e-51 204.9 336 45.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.3e-50 204.5 373 44.2
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.3e-50 204.5 354 46.9
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.7e-50 204.1 349 44.7
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.7e-50 204.1 362 46.4
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.9e-50 203.4 378 44.2
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 3.8e-50 203.0 383 44.6
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 6.4e-50 202.2 371 43.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 8.4e-50 201.8 382 42.7
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 9.2e-49 198.4 352 43.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 9.2e-49 198.4 365 43.3
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.1e-48 197.2 356 43.3
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.6e-48 196.1 300 48.7
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 4.6e-48 196.1 367 42.0
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.0e-47 194.9 361 44.0
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.0e-47 194.9 375 42.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.7e-47 194.1 379 42.0
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.3e-47 193.7 361 43.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 3.0e-47 193.4 400 41.8
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 3.0e-47 193.4 382 40.3
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 3.9e-47 193.0 382 44.5
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.9e-47 193.0 362 42.5
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 5.1e-47 192.6 383 42.8
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 5.1e-47 192.6 369 41.2
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.1e-46 191.4 386 39.4
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.9e-46 190.7 365 44.1
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.5e-46 190.3 395 41.5
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 5.6e-46 189.1 366 41.5
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 5.6e-46 189.1 365 42.7
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 7.3e-46 188.7 379 40.9
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 9.6e-46 188.3 367 42.0
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 9.6e-46 188.3 390 40.8
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.6e-45 187.6 385 40.3
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.6e-45 187.6 369 40.4
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.6e-45 187.6 378 44.7
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 2.1e-45 187.2 368 43.5
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 6.2e-45 185.7 411 39.2
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 8.1e-45 185.3 343 42.6
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.1e-45 185.3 353 41.4
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.9e-44 182.2 344 42.7
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 7.6e-43 178.7 356 41.0
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.3e-42 177.9 395 40.5
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 6.4e-42 175.6 358 38.8
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 8.4e-42 175.3 289 43.6
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 8.4e-42 175.3 289 43.6
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 8.4e-42 175.3 371 41.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 4.2e-41 172.9 350 37.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 9.3e-41 171.8 358 38.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.5e-40 169.9 367 39.0
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.5e-40 169.9 323 41.2
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 6.0e-40 169.1 372 38.2
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 7.8e-40 168.7 366 42.9
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 3.9e-39 166.4 348 38.8
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.9e-39 166.4 364 37.6
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 5.1e-39 166.0 355 36.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.5e-38 164.5 352 38.1
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.9e-38 164.1 342 39.2
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.5e-38 163.7 353 38.2
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.5e-38 163.7 360 39.4
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 9.6e-38 161.8 303 40.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.3e-37 161.4 379 36.9
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.3e-37 161.4 308 42.9
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.6e-37 161.0 295 42.4
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-37 160.6 283 42.8
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 3.6e-37 159.8 283 41.0
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 4.8e-37 159.5 365 36.4
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 6.2e-37 159.1 401 37.9
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.1e-36 158.3 334 41.6
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 5.3e-36 156.0 342 37.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 6.4e-34 149.1 303 39.9
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 5.4e-33 146.0 251 44.2
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.6e-32 144.4 358 36.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 2.7e-32 143.7 348 36.5
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 3.5e-32 143.3 347 35.7
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.0e-32 142.5 240 44.2
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.8e-31 141.0 291 38.8
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.9e-30 137.5 364 34.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.6e-29 134.4 314 36.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 8.1e-29 132.1 252 40.9
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 6.9e-28 129.0 329 37.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.2e-27 128.3 141 58.2
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.3e-26 124.8 310 36.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 4.9e-26 122.9 360 31.7
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.1e-25 121.7 259 37.5
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 5.1e-23 112.8 261 38.7
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.4e-20 104.0 441 29.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.1e-20 103.6 164 45.7
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 4.5e-19 99.8 275 34.2
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.3e-15 87.4 81 67.9
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.0e-15 87.0 105 53.3
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 6.7e-15 85.9 195 34.9
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.5e-14 84.7 167 35.9
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.8e-13 79.7 295 30.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 6.9e-12 75.9 81 60.5
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-11 74.7 69 56.5
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-09 68.6 68 60.3
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.4e-09 68.2 63 58.7
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 5.5e-09 66.2 314 24.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.1e-08 64.3 85 45.9
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.7e-08 63.9 155 35.5
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.4e-07 61.6 65 56.9
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.8e-07 61.2 65 55.4
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.1e-06 58.5 365 26.0
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.5e-06 58.2 132 38.6
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.3e-06 57.0 62 54.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.3e-06 57.0 54 61.1
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 4.3e-06 56.6 92 46.7
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 4.3e-06 56.6 146 34.2


User provided reference genes

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