Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 7.2e-127 457.2 225 100.0
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 3.6e-62 242.3 124 92.7
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 1.1e-58 230.7 124 87.1
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 7.9e-57 224.6 126 84.1
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.0e-56 224.2 125 84.8
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 1.0e-56 224.2 126 82.5
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 1.3e-56 223.8 125 84.8
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 3.0e-56 222.6 125 82.4
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 3.0e-56 222.6 125 82.4
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 6.6e-56 221.5 125 81.6
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 6.6e-56 221.5 125 83.2
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 6.6e-56 221.5 124 82.3
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 8.7e-56 221.1 124 83.1
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 8.7e-56 221.1 125 80.8
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.1e-55 220.7 124 83.1
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.1e-55 220.7 124 83.1
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.5e-55 220.3 125 82.4
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 1.9e-55 219.9 125 81.6
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 2.5e-55 219.5 124 82.3
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 3.3e-55 219.2 125 80.8
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 3.3e-55 219.2 125 80.8
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 4.3e-55 218.8 125 82.4
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 4.3e-55 218.8 124 82.3
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.3e-55 218.8 124 82.3
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.3e-55 218.8 124 82.3
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 4.3e-55 218.8 124 82.3
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 7.4e-55 218.0 151 69.5
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 7.4e-55 218.0 125 81.6
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 7.4e-55 218.0 124 82.3
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 7.4e-55 218.0 124 79.8
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 9.6e-55 217.6 126 79.4
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 9.6e-55 217.6 126 79.4
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 1.3e-54 217.2 125 80.8
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 1.6e-54 216.9 125 83.2
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 1.6e-54 216.9 125 82.4
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 2.8e-54 216.1 125 80.8
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 2.8e-54 216.1 125 81.6
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 3.6e-54 215.7 125 80.8
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 3.6e-54 215.7 125 79.2
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 4.8e-54 215.3 125 80.8
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 4.8e-54 215.3 125 80.8
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 6.2e-54 214.9 125 79.2
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 6.2e-54 214.9 125 81.6
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 8.1e-54 214.5 124 77.4
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 8.1e-54 214.5 124 77.4
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 8.1e-54 214.5 125 81.6
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 1.1e-53 214.2 124 76.6
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 1.4e-53 213.8 126 81.0
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.4e-53 213.8 125 79.2
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 1.8e-53 213.4 125 77.6
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.4e-53 213.0 132 78.8
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 3.1e-53 212.6 125 79.2
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 3.1e-53 212.6 124 77.4
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 4.0e-53 212.2 156 69.2
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 6.9e-53 211.5 125 78.4
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 9.0e-53 211.1 126 76.2
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.2e-52 210.7 125 77.6
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 1.2e-52 210.7 124 80.6
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 1.5e-52 210.3 124 78.2
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 1.5e-52 210.3 124 78.2
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.0e-52 209.9 137 75.2
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 4.5e-52 208.8 125 78.4
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 1.7e-51 206.8 124 77.4
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 1.7e-51 206.8 124 75.0
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 2.2e-51 206.5 124 76.6
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 2.2e-51 206.5 125 78.4
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 3.8e-51 205.7 124 75.0
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 4.9e-51 205.3 125 78.4
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 8.4e-51 204.5 125 79.2
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 8.4e-51 204.5 124 75.8
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 1.1e-50 204.1 149 66.4
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 1.9e-50 203.4 125 77.6
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 2.4e-50 203.0 125 76.0
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 1.6e-49 200.3 124 72.6
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 1.6e-49 200.3 125 75.2
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 2.1e-49 199.9 124 75.8
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 1.0e-48 197.6 171 59.6
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 1.3e-48 197.2 124 73.4
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 2.3e-48 196.4 126 74.6
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 8.7e-48 194.5 125 74.4
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 8.7e-48 194.5 124 71.0
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 8.7e-48 194.5 125 73.6
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 1.9e-47 193.4 125 76.0
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 2.5e-47 193.0 125 72.8
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 2.8e-46 189.5 103 86.4
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 4.8e-46 188.7 108 80.6
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 1.4e-45 187.2 125 70.4
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 5.3e-45 185.3 216 47.7
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 6.9e-45 184.9 103 82.5
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 1.0e-43 181.0 125 68.0
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.3e-43 180.6 103 80.6
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.3e-43 180.6 103 79.6
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 1.3e-43 180.6 125 67.2
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 2.9e-43 179.5 125 65.6
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 2.9e-43 179.5 124 67.7
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 3.2e-42 176.0 125 66.4
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 1.6e-41 173.7 125 68.0
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 1.0e-40 171.0 124 64.5
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 1.3e-40 170.6 123 65.9
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 3.9e-40 169.1 124 62.9
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 3.9e-40 169.1 124 62.9
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 6.7e-40 168.3 125 66.4
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 8.7e-40 167.9 120 66.7
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 1.5e-39 167.2 122 61.5
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 1.3e-38 164.1 124 64.5
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 2.1e-38 163.3 124 63.7
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 4.8e-38 162.2 125 61.6
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 1.1e-37 161.0 122 60.7
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 1.1e-37 161.0 122 60.7
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 4.5e-36 155.6 119 61.3
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 3.3e-31 139.4 113 54.9
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 8.2e-30 134.8 80 76.2
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 8.2e-30 134.8 80 76.2
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 4.6e-25 119.0 105 59.0
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 5.1e-24 115.5 80 63.8
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 5.1e-24 115.5 80 65.0
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 2.2e-22 110.2 77 64.9
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 2.2e-22 110.2 77 64.9
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.9e-18 97.1 69 66.7
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.7e-17 93.2 58 74.1
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.7e-17 93.2 58 74.1
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 3.6e-17 92.8 77 57.1
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 2.0e-15 87.0 78 53.8
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.3e-14 84.3 53 73.6
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 1.4e-13 80.9 59 64.4
TPR.G34385 Trifolium pratense HOM05D006134 ORTHO05D007671 5.0e-11 72.4 44 75.0
Sabra16G0121700 Salix brachista HOM05D006134 ORTHO05D007671 1.5e-10 70.9 45 68.9
EL10Ac8g18393 Beta vulgaris HOM05D006134 ORTHO05D007671 5.5e-10 68.9 44 75.0


User provided reference genes

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