Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 2.4e-84 315.5 158 100.0
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 5.0e-82 307.8 158 98.7
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 4.8e-69 264.6 156 80.8
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 3.1e-68 261.9 153 81.7
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.7e-66 256.1 159 78.0
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 8.5e-66 253.8 160 78.1
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.4e-65 253.1 160 76.9
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.5e-65 252.3 160 76.2
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 5.5e-65 251.1 159 79.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 9.4e-65 250.4 160 76.2
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 9.4e-65 250.4 160 76.2
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 9.4e-65 250.4 160 77.5
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.6e-64 249.6 153 79.1
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 76.2
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.6e-64 249.6 159 76.7
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.6e-64 249.6 159 76.7
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.6e-64 249.6 159 77.4
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.6e-64 249.6 159 76.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 2.1e-64 249.2 159 75.5
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.7e-64 248.8 155 75.5
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 3.6e-64 248.4 160 75.0
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 6.1e-64 247.7 159 76.7
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 7.9e-64 247.3 160 77.5
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.0e-63 246.9 156 77.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.0e-63 246.9 156 78.2
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.0e-63 246.9 158 77.2
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.3e-63 245.7 155 77.4
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 3.0e-63 245.4 165 75.2
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 3.9e-63 245.0 159 75.5
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 3.9e-63 245.0 163 72.4
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.9e-63 245.0 156 77.6
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.9e-63 245.0 156 77.6
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 3.9e-63 245.0 156 74.4
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.1e-63 244.6 156 76.9
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 5.1e-63 244.6 160 73.8
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 5.1e-63 244.6 159 76.1
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 6.7e-63 244.2 157 75.8
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 6.7e-63 244.2 161 75.2
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 6.7e-63 244.2 160 78.1
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 6.7e-63 244.2 160 73.1
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 8.8e-63 243.8 159 74.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.1e-62 243.4 160 75.6
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.1e-62 243.4 160 75.0
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.1e-62 243.4 160 73.1
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.5e-62 243.0 155 76.8
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 156 75.6
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 155 76.8
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 158 76.6
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.6e-62 242.3 160 74.4
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 2.6e-62 242.3 160 75.6
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 3.3e-62 241.9 156 73.7
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.3e-62 241.9 156 73.7
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.7e-62 241.1 155 73.5
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 5.7e-62 241.1 154 77.3
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 7.4e-62 240.7 141 82.3
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 7.4e-62 240.7 159 76.1
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 9.7e-62 240.4 152 78.3
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.3e-61 240.0 155 76.1
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 1.3e-61 240.0 160 70.6
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.3e-61 240.0 159 75.5
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.3e-61 240.0 155 74.2
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.7e-61 239.6 153 76.5
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.7e-61 239.6 155 72.9
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 2.2e-61 239.2 155 77.4
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 3.7e-61 238.4 160 72.5
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 3.7e-61 238.4 155 75.5
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 3.7e-61 238.4 151 74.8
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 4.8e-61 238.0 155 72.3
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 6.3e-61 237.7 147 77.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.1e-60 236.9 155 72.9
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.1e-60 236.9 159 73.6
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.1e-60 236.9 151 73.5
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.1e-60 236.9 151 76.2
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 2.4e-60 235.7 161 71.4
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 4.1e-60 235.0 159 73.6
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 9.1e-60 233.8 155 74.8
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.6e-59 233.0 175 67.4
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.6e-59 233.0 146 73.3
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.6e-59 233.0 165 70.3
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.6e-59 233.0 160 72.5
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.6e-59 233.0 160 71.9
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 4.5e-59 231.5 161 66.5
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 5.9e-59 231.1 161 72.7
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 1.0e-58 230.3 177 65.0
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.7e-58 229.6 155 74.8
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 2.2e-58 229.2 159 69.8
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.9e-58 228.8 151 72.2
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 3.8e-58 228.4 159 72.3
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 5.0e-58 228.0 141 78.0
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 5.0e-58 228.0 180 65.6
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 5.0e-58 228.0 147 71.4
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 8.5e-58 227.3 152 71.1
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 8.5e-58 227.3 138 75.4
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.2e-57 225.3 147 72.8
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 4.2e-57 224.9 161 64.0
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 4.2e-57 224.9 160 70.6
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.5e-57 224.6 160 71.2
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 7.2e-57 224.2 141 75.9
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.5e-54 216.5 151 69.5
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 9.7e-54 213.8 161 66.5
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 9.7e-54 213.8 160 65.0
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 9.7e-54 213.8 199 57.8
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 3.7e-53 211.8 160 64.4
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 4.1e-52 208.4 160 63.1
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 5.3e-52 208.0 160 63.8
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 9.1e-52 207.2 160 62.5
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 9.1e-52 207.2 161 64.6
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 4.5e-51 204.9 158 62.7
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 4.5e-51 204.9 158 62.7
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 5.9e-51 204.5 161 64.6
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 5.0e-50 201.4 141 66.7
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 6.5e-50 201.1 160 61.2
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 6.5e-50 201.1 160 61.2
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 6.5e-50 201.1 157 65.0
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 8.5e-50 200.7 160 60.6
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.1e-49 200.3 159 60.4
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.1e-49 200.3 141 66.0
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 3.2e-49 198.7 141 65.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 7.2e-49 197.6 151 62.9
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.2e-46 190.3 127 72.4
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 2.2e-45 186.0 155 65.2
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.7e-45 185.3 132 65.9
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 2.9e-42 175.6 137 60.6
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.2e-41 172.2 112 73.2
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.6e-35 153.3 121 62.0
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 5.9e-35 151.4 93 79.6
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 6.6e-34 147.9 150 48.7
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 8.0e-32 141.0 148 48.0
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 3.0e-31 139.0 93 68.8
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 9.8e-30 134.0 98 68.4
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 5.4e-28 128.3 151 45.7
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 4.6e-27 125.2 87 67.8
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.1e-24 116.3 77 70.1
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 2.4e-20 102.8 123 43.9
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.6e-19 100.1 123 43.1
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.4e-12 76.3 47 72.3
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 2.1e-11 73.2 50 72.0
Ca_29159_v3 Cicer arietinum L. HOM05D005761 ORTHO05D147516 5.8e-06 55.1 98 30.6


User provided reference genes

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