Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.1e-66 256.5 136 100.0
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 1.4e-53 213.0 137 83.9
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 6.7e-43 177.6 134 70.9
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 6.2e-41 171.0 140 67.9
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 5.5e-37 157.9 144 62.5
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 7.1e-37 157.5 150 58.0
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 6.0e-36 154.5 132 62.9
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 7.9e-36 154.1 144 61.8
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.0e-35 153.7 142 62.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.0e-35 153.7 147 58.5
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.8e-35 152.9 147 61.2
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 1.8e-35 152.9 129 67.4
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 2.3e-35 152.5 151 57.6
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 2.3e-35 152.5 147 57.8
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.9e-35 151.8 136 61.0
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 6.7e-35 151.0 138 61.6
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 6.7e-35 151.0 147 59.2
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.9e-34 149.4 144 61.1
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.9e-34 149.4 141 58.2
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.9e-34 149.4 141 58.2
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 2.5e-34 149.1 136 58.8
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 4.3e-34 148.3 134 61.2
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.3e-34 148.3 150 58.7
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 5.6e-34 147.9 137 63.5
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 5.6e-34 147.9 137 63.5
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 7.4e-34 147.5 133 60.2
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.3e-33 146.7 136 62.5
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 1.3e-33 146.7 142 60.6
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.6e-33 146.4 133 58.6
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.6e-33 146.4 134 59.7
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.1e-33 146.0 136 61.8
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.8e-33 145.6 147 55.8
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 2.8e-33 145.6 128 60.9
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 2.8e-33 145.6 142 60.6
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 2.8e-33 145.6 137 62.8
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 2.8e-33 145.6 134 57.5
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 2.8e-33 145.6 142 61.3
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.7e-33 145.2 132 62.9
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 4.8e-33 144.8 142 59.2
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.8e-33 144.8 128 60.9
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 4.8e-33 144.8 143 58.7
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 6.2e-33 144.4 144 60.4
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 6.2e-33 144.4 161 53.4
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 6.2e-33 144.4 132 62.9
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 6.2e-33 144.4 150 56.0
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 1.1e-32 143.7 151 55.0
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.1e-32 143.7 129 60.5
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.4e-32 143.3 132 61.4
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.8e-32 142.9 158 57.0
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 2.4e-32 142.5 138 58.0
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 2.4e-32 142.5 148 57.4
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 2.4e-32 142.5 145 55.9
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 3.1e-32 142.1 150 55.3
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.0e-32 141.7 145 55.9
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 4.0e-32 141.7 145 55.9
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 4.0e-32 141.7 134 61.2
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 4.0e-32 141.7 133 56.4
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 5.3e-32 141.4 141 60.3
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 5.3e-32 141.4 136 57.4
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 5.3e-32 141.4 136 56.6
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 6.9e-32 141.0 136 59.6
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 6.9e-32 141.0 141 60.3
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 9.0e-32 140.6 143 57.3
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.2e-31 140.2 150 56.0
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 1.2e-31 140.2 148 58.8
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.5e-31 139.8 147 53.7
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 2.0e-31 139.4 132 63.6
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 2.0e-31 139.4 136 56.6
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 2.0e-31 139.4 142 55.6
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 2.6e-31 139.0 157 50.3
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 2.6e-31 139.0 143 53.1
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 2.6e-31 139.0 134 57.5
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 4.5e-31 138.3 142 58.5
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 5.8e-31 137.9 151 52.3
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 5.8e-31 137.9 152 52.6
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 7.6e-31 137.5 142 52.8
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 7.6e-31 137.5 142 52.8
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 7.6e-31 137.5 136 55.1
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 1.0e-30 137.1 134 56.0
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.7e-30 136.3 134 53.7
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.2e-30 136.0 136 55.1
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 3.8e-30 135.2 136 54.4
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 8.4e-30 134.0 122 59.8
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 1.9e-29 132.9 132 52.3
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 3.2e-29 132.1 153 52.3
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 4.2e-29 131.7 132 53.8
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 5.5e-29 131.3 123 59.3
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 5.5e-29 131.3 137 53.3
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 5.5e-29 131.3 137 53.3
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 7.1e-29 131.0 133 56.4
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.2e-28 130.2 122 58.2
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 2.7e-28 129.0 132 53.8
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 2.7e-28 129.0 139 50.4
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 7.9e-28 127.5 140 55.0
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 7.9e-28 127.5 141 53.9
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 7.9e-28 127.5 134 54.5
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 1.3e-27 126.7 134 57.5
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 1.8e-27 126.3 129 55.0
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.8e-27 126.3 132 54.5
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 1.8e-27 126.3 142 54.2
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.3e-27 125.9 125 57.6
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 3.9e-27 125.2 132 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 1.5e-26 123.2 132 52.3
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 1.5e-26 123.2 128 53.9
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 1.5e-26 123.2 128 53.1
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 1.5e-26 123.2 128 53.1
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 1.5e-26 123.2 128 53.1
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 1.5e-26 123.2 128 53.1
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 5.7e-26 121.3 145 50.3
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.3e-25 120.2 149 51.0
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 4.1e-24 115.2 134 50.0
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 9.0e-24 114.0 144 49.3
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 5.9e-23 111.3 138 50.0
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 3.2e-21 105.5 131 51.9
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 4.2e-21 105.1 113 54.9
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.7e-20 102.4 130 46.2
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 4.6e-20 101.7 125 48.0
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 7.9e-20 100.9 109 57.8
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.4e-19 100.1 125 48.0
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.7e-17 92.0 108 50.0
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 6.3e-17 91.3 145 42.8
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.2e-15 87.0 98 51.0
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 3.8e-14 82.0 129 44.2
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 8.5e-14 80.9 56 69.6
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 2.0e-10 69.7 52 63.5
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.3e-09 67.0 50 56.0
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 2.2e-09 66.2 52 59.6
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 2.8e-09 65.9 132 34.1
SGA_v2.0_scaffold332G48968 Striga asiatica HOM05D006047 ORTHO05D007353 2.8e-09 65.9 60 71.7
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 7.0e-08 61.2 66 48.5
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 1.0e-06 57.4 122 36.1
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 2.2e-06 56.2 123 35.8
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 2.2e-06 56.2 103 40.8
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 6.5e-06 54.7 126 31.7
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 8.5e-06 54.3 126 31.7
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 8.5e-06 54.3 122 35.2
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 8.5e-06 54.3 122 35.2
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 8.5e-06 54.3 118 35.6


User provided reference genes

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