Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.1e-113 413.3 199 100.0
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 9.4e-54 214.2 162 69.8
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.4e-52 210.3 160 67.5
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 5.2e-52 208.4 160 67.5
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 6.7e-52 208.0 160 68.1
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 8.8e-52 207.6 160 67.5
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.5e-51 206.8 160 66.9
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.5e-51 206.8 160 67.5
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 66.9
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 66.9
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 66.9
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 66.9
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 66.9
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 67.5
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 2.0e-51 206.5 160 66.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 3.3e-51 205.7 160 66.9
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.3e-51 205.7 160 66.9
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 3.3e-51 205.7 160 66.2
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 3.3e-51 205.7 160 66.2
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 3.3e-51 205.7 160 66.2
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 3.3e-51 205.7 160 66.9
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 4.4e-51 205.3 160 66.2
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 4.4e-51 205.3 160 66.2
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 5.7e-51 204.9 160 66.2
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 5.7e-51 204.9 193 58.5
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 7.4e-51 204.5 160 65.0
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 7.4e-51 204.5 160 66.2
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 7.4e-51 204.5 160 66.9
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 9.7e-51 204.1 160 66.2
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 9.7e-51 204.1 160 66.9
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 9.7e-51 204.1 160 66.9
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 9.7e-51 204.1 160 66.9
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.3e-50 203.8 160 65.6
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.3e-50 203.8 160 65.6
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.3e-50 203.8 160 65.6
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.3e-50 203.8 160 66.9
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.3e-50 203.8 160 65.6
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.7e-50 203.4 160 66.9
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.7e-50 203.4 160 65.6
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.7e-50 203.4 160 65.6
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.2e-50 203.0 160 65.6
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 2.2e-50 203.0 160 65.6
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 2.8e-50 202.6 160 66.2
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.8e-50 202.6 160 65.6
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 2.8e-50 202.6 160 65.6
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 2.8e-50 202.6 160 65.0
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.7e-50 202.2 160 65.6
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 3.7e-50 202.2 160 66.2
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 3.7e-50 202.2 160 65.6
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 3.7e-50 202.2 160 65.6
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 3.7e-50 202.2 160 65.6
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 3.7e-50 202.2 160 65.6
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 4.8e-50 201.8 160 65.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 4.8e-50 201.8 160 65.6
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 6.3e-50 201.4 160 66.2
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.3e-50 201.4 160 65.0
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 6.3e-50 201.4 160 65.0
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.6
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.6
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.6
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.6
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.0
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.0
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.6
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 66.2
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 8.2e-50 201.1 160 65.6
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.1e-49 200.7 160 65.6
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.1e-49 200.7 160 65.0
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.1e-49 200.7 160 65.0
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.1e-49 200.7 160 65.0
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.1e-49 200.7 160 65.0
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.4e-49 200.3 160 64.4
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.4e-49 200.3 160 64.4
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.4e-49 200.3 160 65.0
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 2.4e-49 199.5 195 57.4
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 3.1e-49 199.1 160 63.1
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.1e-49 199.1 160 63.8
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.1e-49 199.1 160 63.1
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 3.1e-49 199.1 160 64.4
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 3.1e-49 199.1 160 64.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 4.1e-49 198.7 160 63.1
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 5.3e-49 198.4 160 65.0
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 5.3e-49 198.4 169 62.7
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 5.3e-49 198.4 160 63.8
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 7.0e-49 198.0 160 63.8
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 9.1e-49 197.6 160 63.1
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.2e-48 197.2 160 65.0
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-48 197.2 160 64.4
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.2e-48 197.2 160 63.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.2e-48 197.2 160 61.9
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 3.5e-48 195.7 160 63.8
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 3.5e-48 195.7 160 63.8
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 5.9e-48 194.9 159 65.4
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 7.7e-48 194.5 198 55.6
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.0e-47 194.1 160 61.2
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.3e-47 193.7 160 63.1
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.3e-47 193.7 160 63.1
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.9e-47 192.6 160 62.5
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 2.9e-47 192.6 160 63.1
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.9e-47 192.6 160 63.1
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.9e-47 192.6 151 67.5
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 3.8e-47 192.2 160 61.2
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 3.8e-47 192.2 160 61.9
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.1e-46 190.7 160 63.8
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.1e-46 190.7 160 63.8
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.1e-46 190.7 160 63.8
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.1e-46 190.7 160 63.8
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.5e-46 190.3 160 63.8
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 9.4e-46 187.6 188 56.9
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.4e-44 183.7 160 58.8
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 2.6e-43 179.5 115 77.4
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.3e-42 177.2 160 58.8
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 3.7e-42 175.6 114 75.4
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 4.8e-42 175.3 160 55.6
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.8e-41 173.3 150 58.7
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 1.7e-39 166.8 160 56.9
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.9e-38 163.3 160 50.6
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.5e-38 162.9 143 61.5
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 5.5e-38 161.8 144 59.0
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 7.2e-38 161.4 160 51.2
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.2e-34 149.8 134 60.4
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 6.3e-34 148.3 160 45.0
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 4.5e-32 142.1 155 46.5
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.5e-30 137.1 118 63.6
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 2.1e-29 133.3 140 52.9
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 4.3e-22 109.0 171 40.9
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 5.2e-20 102.1 160 36.9
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 2.0e-16 90.1 43 93.0
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 1.4e-12 77.4 73 56.2
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 8.9e-12 74.7 73 54.8
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.6e-11 73.2 73 53.4
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 2.6e-11 73.2 73 52.1
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 3.7e-10 69.3 44 75.0
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 3.0e-07 59.7 125 32.8
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 3.3e-06 56.2 166 28.9


User provided reference genes

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