Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 3.0e-96 355.1 177 100.0
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 1.7e-83 312.8 177 87.6
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.1e-77 293.5 172 82.0
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 1.6e-76 289.7 177 81.4
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 1.6e-76 289.7 174 78.2
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 1.6e-76 289.7 172 82.0
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 2.7e-76 288.9 172 80.8
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 5.9e-76 287.7 173 83.2
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 1.0e-75 287.0 177 80.2
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 2.9e-75 285.4 173 78.6
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 3.9e-75 285.0 174 79.9
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.1e-74 283.5 172 77.9
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 1.5e-74 283.1 176 78.4
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.9e-74 282.7 191 76.4
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 1.9e-74 282.7 171 78.9
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 2.5e-74 282.3 171 78.4
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.5e-74 282.3 173 79.2
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 3.3e-74 282.0 171 78.9
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 1.2e-73 280.0 171 78.4
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 1.2e-73 280.0 171 78.9
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.2e-73 280.0 169 79.3
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 1.6e-73 279.6 171 78.4
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.6e-73 279.6 171 78.9
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 2.8e-73 278.9 172 77.3
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 3.6e-73 278.5 172 77.3
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 8.0e-73 277.3 171 80.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 8.0e-73 277.3 173 76.3
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 1.0e-72 276.9 172 77.3
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 1.8e-72 276.2 171 79.5
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 1.8e-72 276.2 173 76.9
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 2.3e-72 275.8 172 77.9
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.3e-72 275.8 170 78.2
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 2.3e-72 275.8 171 78.4
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 2.3e-72 275.8 171 78.4
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 3.1e-72 275.4 171 77.2
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 4.0e-72 275.0 172 77.3
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 4.0e-72 275.0 172 75.6
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 4.0e-72 275.0 171 76.6
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 5.2e-72 274.6 172 77.3
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 6.8e-72 274.2 177 75.7
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 8.9e-72 273.9 173 75.7
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 8.9e-72 273.9 171 77.8
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 8.9e-72 273.9 177 73.4
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 8.9e-72 273.9 171 79.5
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 8.9e-72 273.9 172 76.7
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.2e-71 273.5 174 77.0
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.5e-71 273.1 171 77.8
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.5e-71 273.1 177 75.1
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 1.5e-71 273.1 172 76.7
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 2.0e-71 272.7 173 75.7
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 2.0e-71 272.7 173 75.7
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 2.6e-71 272.3 170 75.9
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 2.6e-71 272.3 177 75.1
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 2.6e-71 272.3 171 76.0
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 2.6e-71 272.3 171 77.2
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 3.4e-71 271.9 173 78.0
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 3.4e-71 271.9 174 74.7
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 4.4e-71 271.6 168 79.8
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 4.4e-71 271.6 172 75.6
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 5.8e-71 271.2 173 75.1
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 9.8e-71 270.4 172 76.2
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 9.8e-71 270.4 171 77.2
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 2.2e-70 269.2 177 74.6
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.2e-70 269.2 172 75.6
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 2.9e-70 268.9 171 75.4
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 3.7e-70 268.5 160 80.6
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 4.9e-70 268.1 173 75.1
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 6.4e-70 267.7 171 76.6
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 6.4e-70 267.7 173 74.6
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 8.3e-70 267.3 177 74.0
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 8.3e-70 267.3 171 74.9
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 8.3e-70 267.3 176 76.1
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.1e-69 266.9 170 74.7
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 1.1e-69 266.9 171 74.9
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 1.4e-69 266.5 171 74.9
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.9e-69 266.2 177 72.9
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 2.4e-69 265.8 171 74.9
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 2.4e-69 265.8 173 73.4
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 4.1e-69 265.0 171 75.4
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 5.4e-69 264.6 171 74.3
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 7.0e-69 264.2 177 70.6
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 1.2e-68 263.5 169 71.6
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 2.0e-68 262.7 174 73.6
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 2.7e-68 262.3 172 74.4
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.5e-68 261.9 171 74.9
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 4.6e-68 261.5 173 70.5
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 6.0e-68 261.2 169 75.7
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 7.8e-68 260.8 171 72.5
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 1.0e-67 260.4 172 73.8
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 1.3e-67 260.0 169 74.0
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.3e-67 260.0 176 71.6
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 1.7e-67 259.6 172 73.8
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 1.7e-67 259.6 172 73.3
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 2.3e-67 259.2 170 74.7
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 2.3e-67 259.2 172 73.3
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.3e-67 259.2 171 71.9
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 2.3e-67 259.2 171 74.9
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 3.0e-67 258.8 172 73.3
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 5.0e-67 258.1 174 71.8
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.0e-67 258.1 153 79.7
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 6.6e-67 257.7 172 72.7
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-66 256.9 171 73.1
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.9e-66 256.1 167 74.3
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 2.5e-66 255.8 154 77.9
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 9.5e-66 253.8 151 80.1
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 1.2e-65 253.4 167 73.7
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.6e-65 253.1 169 71.6
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 1.6e-65 253.1 173 68.8
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 4.7e-65 251.5 171 67.8
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 4.7e-65 251.5 169 72.2
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 1.1e-64 250.4 154 77.9
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 2.3e-64 249.2 169 68.6
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 2.3e-64 249.2 170 72.9
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 2.6e-63 245.7 171 71.3
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 7.5e-63 244.2 154 77.3
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 7.5e-63 244.2 154 77.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 9.8e-63 243.8 155 75.5
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.5e-58 229.9 149 73.2
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.5e-58 229.9 149 73.2
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 2.6e-55 219.2 171 61.4
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.7e-54 216.5 153 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 8.1e-49 197.6 168 54.2
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 1.4e-48 196.8 170 54.7
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 5.2e-48 194.9 172 59.9
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 1.2e-47 193.7 152 59.9
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.4e-47 191.8 117 75.2
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 7.6e-47 191.0 154 61.0
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 3.8e-46 188.7 128 71.9
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 3.8e-46 188.7 168 51.2
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.7e-43 179.9 116 78.4
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 1.1e-42 177.2 172 54.7
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 3.3e-42 175.6 172 53.5
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 5.3e-40 168.3 168 47.0
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 7.6e-39 164.5 174 52.3
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.8e-38 162.2 114 69.3
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.9e-38 161.8 100 73.0
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 5.4e-37 158.3 172 47.1
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 3.5e-36 155.6 97 76.3
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 2.3e-35 152.9 131 57.3
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 2.3e-35 152.9 131 57.3
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.5e-34 150.2 172 49.4
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.3e-34 149.1 116 62.9
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 1.3e-33 147.1 101 67.3
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.8e-25 118.6 88 62.5
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.7e-22 110.2 159 39.6
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 3.3e-18 95.9 58 79.3
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 2.8e-17 92.8 58 79.3
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.7e-14 83.6 173 35.3
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 4.6e-12 75.5 62 64.5
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.3e-11 73.9 104 40.4
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 3.1e-08 62.8 39 76.9


User provided reference genes

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