Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 8.1e-125 450.7 269 100.0
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 1.1e-33 147.9 141 56.7
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 1.7e-29 134.0 145 52.4
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 1.0e-26 124.8 138 47.1
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 3.8e-26 122.9 140 48.6
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 8.6e-26 121.7 139 44.6
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 1.5e-25 120.9 134 46.3
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.9e-25 120.6 134 45.5
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 5.6e-25 119.0 143 44.8
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 1.2e-24 117.9 140 47.1
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 1.6e-24 117.5 139 48.2
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 2.1e-24 117.1 146 45.2
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 6.1e-24 115.5 82 70.7
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 2.0e-22 110.5 131 48.1
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 1.7e-21 107.5 75 68.0
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 4.9e-21 105.9 162 42.0
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 2.4e-20 103.6 136 41.9
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 2.4e-20 103.6 134 39.6
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 3.2e-20 103.2 153 38.6
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 3.2e-20 103.2 143 42.0
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 1.2e-19 101.3 138 42.8
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 4.6e-19 99.4 133 41.4
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 5.9e-19 99.0 127 45.7
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 5.9e-19 99.0 138 41.3
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 5.9e-19 99.0 138 41.3
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 5.9e-19 99.0 142 39.4
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 1.3e-18 97.8 125 43.2
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 1.3e-18 97.8 126 44.4
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 1.7e-18 97.4 125 43.2
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 1.7e-18 97.4 143 41.3
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 1.7e-18 97.4 142 39.4
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 1.7e-18 97.4 139 38.8
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 3.9e-18 96.3 138 41.3
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 3.9e-18 96.3 67 64.2
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.1e-17 94.7 138 39.9
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 1.9e-17 94.0 143 39.9
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 2.5e-17 93.6 125 40.8
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 9.5e-17 91.7 137 38.0
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 2.8e-16 90.1 134 38.8
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 3.6e-16 89.7 124 41.1
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 3.6e-16 89.7 125 42.4
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 3.6e-16 89.7 138 38.4
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 6.2e-16 89.0 130 36.9
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 8.0e-16 88.6 129 37.2
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 1.1e-15 88.2 140 41.4
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 1.4e-15 87.8 154 38.3
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 1.8e-15 87.4 127 36.2
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 1.8e-15 87.4 132 37.1
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 2.3e-15 87.0 135 39.3
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 3.1e-15 86.7 126 41.3
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 4.0e-15 86.3 141 39.0
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 4.0e-15 86.3 69 55.1
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 4.0e-15 86.3 130 36.2
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 4.0e-15 86.3 128 39.1
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 5.2e-15 85.9 128 39.1
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 8.9e-15 85.1 136 35.3
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 8.9e-15 85.1 137 37.2
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 8.9e-15 85.1 124 39.5
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 1.5e-14 84.3 130 36.2
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 1.5e-14 84.3 130 36.9
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 2.6e-14 83.6 130 38.5
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 3.4e-14 83.2 130 35.4
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 4.4e-14 82.8 125 36.8
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 5.8e-14 82.4 73 56.2
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 5.8e-14 82.4 144 38.2
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 7.5e-14 82.0 131 35.1
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 7.5e-14 82.0 130 37.7
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 9.8e-14 81.6 144 36.8
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 3.7e-13 79.7 136 35.3
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 3.7e-13 79.7 131 34.4
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 4.9e-13 79.3 61 60.7
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 6.4e-13 79.0 139 33.8
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 1.1e-12 78.2 130 34.6
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 1.1e-12 78.2 130 35.4
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 2.4e-12 77.0 126 34.9
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 2.4e-12 77.0 130 35.4
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 2.4e-12 77.0 130 36.2
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 2.4e-12 77.0 130 36.2
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 3.2e-12 76.6 131 34.4
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 3.2e-12 76.6 130 34.6
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 3.2e-12 76.6 130 34.6
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 4.1e-12 76.3 130 35.4
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 7.0e-12 75.5 138 33.3
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 2.7e-11 73.6 131 35.1
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 2.7e-11 73.6 131 35.1
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 2.7e-11 73.6 131 35.1
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 2.7e-11 73.6 74 45.9
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 3.5e-11 73.2 132 37.9
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 4.6e-11 72.8 134 32.8
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 6.0e-11 72.4 139 32.4
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 6.0e-11 72.4 139 32.4
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 7.8e-11 72.0 273 28.6
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.3e-10 71.2 127 33.9
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 3.0e-10 70.1 133 35.3
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 5.0e-10 69.3 148 32.4
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 1.1e-09 68.2 128 35.2
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.5e-09 67.8 125 33.6
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 2.1e-08 63.9 128 33.6
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 2.1e-08 63.9 131 32.8
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 1.4e-07 61.2 73 42.5
Nitab4.5_0000181g0070 Nicotiana tabacum HOM05D038777 ORTHO05D049402 1.5e-06 57.8 40 62.5
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 2.6e-06 57.0 57 45.6
DCAR_018820 Daucus carota HOM05D007207 ORTHO05D009041 5.8e-06 55.8 42 59.5
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 7.5e-06 55.5 122 33.6


User provided reference genes

Program Settings