Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25744 Striga asiatica HOM05D016002 ORTHO05D016997 3.8e-125 451.4 218 100.0
SGA_v2.0_scaffold172G39078 Striga asiatica HOM05D016002 ORTHO05D016997 1.3e-67 260.4 217 58.5
SalBow3G1078 Salvia bowleyana HOM05D016002 ORTHO05D016997 1.7e-48 196.8 212 47.6
Oeu042236.1 Olea europaea HOM05D016002 ORTHO05D016997 5.5e-47 191.8 208 46.6
Nitab4.5_0004438g0020 Nicotiana tabacum HOM05D016002 ORTHO05D016997 1.2e-33 147.5 173 47.4
Migut.N02617 Erythranthe guttata HOM05D016002 ORTHO05D016997 5.9e-33 145.2 126 53.2
Peaxi162Scf00086g00327 Petunia axillaris HOM05D016002 ORTHO05D016997 6.5e-32 141.7 188 46.8
Nitab4.5_0000570g0030 Nicotiana tabacum HOM05D016002 ORTHO05D016997 3.2e-31 139.4 180 45.6
Solyc12g099655.1 Solanum lycopersicum HOM05D016002 ORTHO05D016997 1.2e-17 94.4 97 51.5
Ciclev10002346m.g Citrus clementina HOM05D000519 ORTHO05D001210 2.2e-08 63.5 110 36.4
PGR042G2892 Punica granatum HOM05D000519 ORTHO05D001210 5.0e-08 62.4 79 43.0
Prupe.2G047300 Prunus persica HOM05D000519 ORTHO05D001210 6.5e-08 62.0 81 39.5
Actinidia16364 Actinidia chinensis HOM05D000519 ORTHO05D001210 8.5e-08 61.6 91 35.2
A04p31240 Brassica napus HOM05D000519 ORTHO05D001210 8.5e-08 61.6 90 36.7
BraA04t18580Z Brassica rapa HOM05D000519 ORTHO05D001210 8.5e-08 61.6 90 36.7
Cc01_g07170 Coffea canephora HOM05D000519 ORTHO05D001210 8.5e-08 61.6 87 36.8
AUR62032567 Chenopodium quinoa HOM05D000519 ORTHO05D001210 1.1e-07 61.2 109 36.7
Sc16g0010850 Simmondsia chinensis HOM05D000519 ORTHO05D001210 1.1e-07 61.2 90 40.0
BcaB06g25535 Brassica carinata HOM05D000519 ORTHO05D001210 1.5e-07 60.8 99 36.4
MBI13_g00895_MAGBIO Magnolia biondii HOM05D000519 ORTHO05D001210 1.5e-07 60.8 77 41.6
Os01g0803200 Oryza sativa ssp. japonica HOM05D000519 ORTHO05D001210 1.5e-07 60.8 102 36.3
CSS0027877 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 1.9e-07 60.5 70 45.7
CSS0032644 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 1.9e-07 60.5 70 45.7
Oeu025948.1 Olea europaea HOM05D000519 ORTHO05D001210 1.9e-07 60.5 79 44.3
TWI79G0790 Tripterygium wilfordii HOM05D000519 ORTHO05D001210 1.9e-07 60.5 71 42.3
vmacro13804 Vaccinium macrocarpon HOM05D000519 ORTHO05D001210 2.5e-07 60.1 100 34.0
AL3G24120 Arabidopsis lyrata HOM05D000519 ORTHO05D001210 3.2e-07 59.7 95 36.8
arahy.Tifrunner.gnm1.ann1.QSG82C Arachis hypogaea HOM05D000519 ORTHO05D001210 3.2e-07 59.7 88 39.8
A05p36980 Brassica napus HOM05D000519 ORTHO05D001210 3.2e-07 59.7 95 36.8
Haze_23548 Corylus avellana HOM05D000519 ORTHO05D001210 3.2e-07 59.7 73 38.4
BcaC05g29262 Brassica carinata HOM05D000519 ORTHO05D001210 4.2e-07 59.3 106 34.0
C01p52750 Brassica napus HOM05D000519 ORTHO05D001210 4.2e-07 59.3 103 35.0
BolC1t05212H Brassica oleracea HOM05D000519 ORTHO05D001210 4.2e-07 59.3 103 35.0
CAN.G65.204 Capsicum annuum HOM05D000519 ORTHO05D001210 4.2e-07 59.3 75 40.0
AUR62031684 Chenopodium quinoa HOM05D000519 ORTHO05D001210 4.2e-07 59.3 109 35.8
Duzib170G0541 Durio zibethinus HOM05D000519 ORTHO05D001210 4.2e-07 59.3 68 44.1
Ah.06g194910 Amaranthus hybridus HOM05D000519 ORTHO05D001210 5.5e-07 58.9 96 35.4
BcaC02g12853 Brassica carinata HOM05D000519 ORTHO05D001210 5.5e-07 58.9 87 36.8
C04p68610 Brassica napus HOM05D000519 ORTHO05D001210 5.5e-07 58.9 87 36.8
BolC4t28367H Brassica oleracea HOM05D000519 ORTHO05D001210 5.5e-07 58.9 87 36.8
Glyma.13G189500 Glycine max HOM05D000519 ORTHO05D001210 5.5e-07 58.9 82 40.2
MD07G1042400 Malus domestica HOM05D000519 ORTHO05D001210 5.5e-07 58.9 108 32.4
Actinidia38198 Actinidia chinensis HOM05D000519 ORTHO05D001210 7.2e-07 58.5 87 36.8
C05p55420 Brassica napus HOM05D000519 ORTHO05D001210 7.2e-07 58.5 102 35.3
BolC5t34208H Brassica oleracea HOM05D000519 ORTHO05D001210 7.2e-07 58.5 102 35.3
CSS0046566 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 7.2e-07 58.5 92 35.9
Cc06_g20400 Coffea canephora HOM05D000519 ORTHO05D001210 7.2e-07 58.5 103 34.0
Duzib150G0614 Durio zibethinus HOM05D000519 ORTHO05D001210 7.2e-07 58.5 73 39.7
Glyma.15G227500 Glycine max HOM05D000519 ORTHO05D001210 7.2e-07 58.5 82 40.2
Gohir.D10G198100 Gossypium hirsutum HOM05D000519 ORTHO05D001210 7.2e-07 58.5 95 33.7
Gorai.011G221800 Gossypium raimondii HOM05D000519 ORTHO05D001210 7.2e-07 58.5 95 33.7
Nitab4.5_0000428g0040 Nicotiana tabacum HOM05D000519 ORTHO05D001210 7.2e-07 58.5 80 43.8
RcHm_v2.0_Chr1g0328521 Rosa chinensis HOM05D000519 ORTHO05D001210 7.2e-07 58.5 81 39.5
Solyc01g009020.4 Solanum lycopersicum HOM05D000519 ORTHO05D001210 7.2e-07 58.5 80 43.8
Sopen01g004510 Solanum pennellii HOM05D000519 ORTHO05D001210 7.2e-07 58.5 80 43.8
arahy.Tifrunner.gnm1.ann1.DBX871 Arachis hypogaea HOM05D000519 ORTHO05D001210 9.4e-07 58.2 77 42.9
BcaC02g12855 Brassica carinata HOM05D000519 ORTHO05D001210 9.4e-07 58.2 82 40.2
C04p68630 Brassica napus HOM05D000519 ORTHO05D001210 9.4e-07 58.2 82 40.2
BolC4t28369H Brassica oleracea HOM05D000519 ORTHO05D001210 9.4e-07 58.2 82 40.2
Cfa010161 Carpinus fangiana HOM05D000519 ORTHO05D001210 9.4e-07 58.2 73 38.4
COL.COLO4_33263 Corchorus olitorius HOM05D000519 ORTHO05D001210 9.4e-07 58.2 60 46.7
Dinv15409 Davidia involucrata HOM05D000519 ORTHO05D001210 9.4e-07 58.2 79 41.8
FvH4_7g04180 Fragaria vesca HOM05D000519 ORTHO05D001210 9.4e-07 58.2 81 37.0
FAN01G2306 Fragaria x ananassa HOM05D000519 ORTHO05D001210 9.4e-07 58.2 81 37.0
Manes.02G134700 Manihot esculenta HOM05D000519 ORTHO05D001210 9.4e-07 58.2 92 35.9
PGR119G1689 Punica granatum HOM05D000519 ORTHO05D001210 9.4e-07 58.2 68 42.6
PGSC0003DMG400022691 Solanum tuberosum HOM05D000519 ORTHO05D001210 9.4e-07 58.2 80 43.8
ATR0307G050 Amborella trichopoda HOM05D000519 ORTHO05D001210 1.2e-06 57.8 86 39.5
arahy.Tifrunner.gnm1.ann1.PELT1K Arachis hypogaea HOM05D000519 ORTHO05D001210 1.2e-06 57.8 64 42.2
AUR62000233 Chenopodium quinoa HOM05D000519 ORTHO05D001210 1.2e-06 57.8 81 40.7
DCAR_031843 Daucus carota HOM05D000519 ORTHO05D001210 1.2e-06 57.8 74 43.2
Duzib106G2054 Durio zibethinus HOM05D000519 ORTHO05D001210 1.2e-06 57.8 88 35.2
FAN06G3149 Fragaria x ananassa HOM05D000519 ORTHO05D001210 1.2e-06 57.8 81 35.8
Gohir.A10G190300 Gossypium hirsutum HOM05D000519 ORTHO05D001210 1.2e-06 57.8 95 33.7
BraA05t22497Z Brassica rapa HOM05D000519 ORTHO05D001210 1.6e-06 57.4 95 35.8
Eucgr.J00666 Eucalyptus grandis HOM05D000519 ORTHO05D001210 1.6e-06 57.4 73 39.7
Thhalv10021442m.g Eutrema salsugineum HOM05D000519 ORTHO05D001210 1.6e-06 57.4 95 35.8
Glyma.13G071800 Glycine max HOM05D000519 ORTHO05D001210 1.6e-06 57.4 75 38.7
Glyma.20G045500 Glycine max HOM05D000519 ORTHO05D001210 1.6e-06 57.4 69 42.0
Nitab4.5_0002300g0010 Nicotiana tabacum HOM05D000519 ORTHO05D001210 1.6e-06 57.4 74 43.2
Zm00001eb369350 Zea mays HOM05D000519 ORTHO05D001210 1.6e-06 57.4 81 39.5
BcaC09g48245 Brassica carinata HOM05D000519 ORTHO05D001210 2.1e-06 57.0 79 39.2
CSS0046647 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 2.1e-06 57.0 83 36.1
CARHR086990 Cardamine hirsuta HOM05D000519 ORTHO05D001210 2.1e-06 57.0 99 35.4
Lsat_1_v5_gn_1_53641 Lactuca sativa HOM05D000519 ORTHO05D001210 2.1e-06 57.0 60 43.3
RcHm_v2.0_Chr1g0328231 Rosa chinensis HOM05D000519 ORTHO05D001210 2.1e-06 57.0 83 38.6
Sed0006841 Sechium edule HOM05D000519 ORTHO05D001210 2.1e-06 57.0 68 39.7
unitig_62.g23871 Utricularia gibba HOM05D000519 ORTHO05D001210 2.1e-06 57.0 69 44.9
vmacro04012 Vaccinium macrocarpon HOM05D000519 ORTHO05D001210 2.1e-06 57.0 70 42.9
BcaB06g29185 Brassica carinata HOM05D000519 ORTHO05D001210 2.7e-06 56.6 85 37.6
BraA01t04133Z Brassica rapa HOM05D000519 ORTHO05D001210 2.7e-06 56.6 103 34.0
Cpa.g.sc34.197 Carica papaya HOM05D000519 ORTHO05D001210 2.7e-06 56.6 80 37.5
Lsat_1_v5_gn_1_53661 Lactuca sativa HOM05D000519 ORTHO05D001210 2.7e-06 56.6 58 43.1
Lalb_Chr04g0249351 Lupinus albus HOM05D000519 ORTHO05D001210 2.7e-06 56.6 57 43.9
PGSC0003DMG400005921 Solanum tuberosum HOM05D000519 ORTHO05D019510 2.7e-06 56.6 57 38.6
PGSC0003DMG400005950 Solanum tuberosum HOM05D000519 ORTHO05D019510 2.7e-06 56.6 63 38.1
SGA_v2.0_scaffold29G12144 Striga asiatica HOM05D000519 ORTHO05D001210 2.7e-06 56.6 66 39.4
VMungo1127G0633 Vigna mungo HOM05D000519 ORTHO05D001210 2.7e-06 56.6 83 39.8
Aa31sc1276G20 Aethionema arabicum HOM05D000519 ORTHO05D001210 3.6e-06 56.2 99 34.3
EL10Ac2g02716 Beta vulgaris HOM05D000519 ORTHO05D001210 3.6e-06 56.2 110 30.0
CANSAT25G3001 Cannabis sativa HOM05D000519 ORTHO05D001210 3.6e-06 56.2 68 41.2
CANSAT54G0848 Cannabis sativa HOM05D000519 ORTHO05D001210 3.6e-06 56.2 68 41.2
CDE02G2182 Ceratophyllum demersum HOM05D000519 ORTHO05D001210 3.6e-06 56.2 79 39.2
CDE08G1526 Ceratophyllum demersum HOM05D000519 ORTHO05D001210 3.6e-06 56.2 85 37.6
Duzib114G0410 Durio zibethinus HOM05D000519 ORTHO05D001210 3.6e-06 56.2 79 38.0
FvH4_7g04140 Fragaria vesca HOM05D000519 ORTHO05D001210 3.6e-06 56.2 69 40.6
FAN03G2892 Fragaria x ananassa HOM05D000519 ORTHO05D001210 3.6e-06 56.2 69 40.6
FAN06G2804 Fragaria x ananassa HOM05D000519 ORTHO05D001210 3.6e-06 56.2 69 40.6
Gorai.010G215400 Gossypium raimondii HOM05D000519 ORTHO05D001210 3.6e-06 56.2 60 45.0
Hma1.2p1_1843F.1_g305060 Hydrangea macrophylla HOM05D000519 ORTHO05D001210 3.6e-06 56.2 86 34.9
Hma1.2p1_2592F.1_g325053 Hydrangea macrophylla HOM05D000519 ORTHO05D001210 3.6e-06 56.2 86 34.9
MD07G1043000 Malus domestica HOM05D000519 ORTHO05D001210 3.6e-06 56.2 70 41.4
Potri.016G030900 Populus trichocarpa HOM05D000519 ORTHO05D001210 3.6e-06 56.2 68 39.7
Thecc.09G251500 Theobroma cacao HOM05D000519 ORTHO05D001210 3.6e-06 56.2 60 45.0
Ah.10g029850 Amaranthus hybridus HOM05D000519 ORTHO05D001210 4.7e-06 55.8 102 32.4
Carub.0003s1182 Capsella rubella HOM05D000519 ORTHO05D001210 4.7e-06 55.8 95 34.7
FAN01G0617 Fragaria x ananassa HOM05D000519 ORTHO05D001210 4.7e-06 55.8 76 40.8
Glyma.18G103700 Glycine max HOM05D000519 ORTHO05D001210 4.7e-06 55.8 96 32.3
MD02G1275000 Malus domestica HOM05D000519 ORTHO05D001210 4.7e-06 55.8 82 37.8
Phvul.011G196600 Phaseolus vulgaris HOM05D000519 ORTHO05D001210 4.7e-06 55.8 82 37.8
Thecc.10G138800 Theobroma cacao HOM05D000519 ORTHO05D001210 4.7e-06 55.8 79 38.0
TAR633G0145 Trochodendron aralioides HOM05D000519 ORTHO05D001210 4.7e-06 55.8 79 40.5
arahy.Tifrunner.gnm1.ann1.UN6PZ5 Arachis hypogaea HOM05D000519 ORTHO05D001210 6.1e-06 55.5 90 35.6
arahy.Tifrunner.gnm1.ann1.ZL1DA1 Arachis hypogaea HOM05D000519 ORTHO05D001210 6.1e-06 55.5 68 42.6
Cfa010968 Carpinus fangiana HOM05D000519 ORTHO05D001210 6.1e-06 55.5 60 45.0
CiPaw.14G010700 Carya illinoinensis HOM05D000519 ORTHO05D001210 6.1e-06 55.5 81 38.3
Haze_02970 Corylus avellana HOM05D000519 ORTHO05D001210 6.1e-06 55.5 60 45.0
MELO3C019126.2 Cucumis melo HOM05D000519 ORTHO05D001210 6.1e-06 55.5 79 38.0
Potri.006G033201 Populus trichocarpa HOM05D000519 ORTHO05D001210 6.1e-06 55.5 68 39.7
Prupe.2G047100 Prunus persica HOM05D000519 ORTHO05D001210 6.1e-06 55.5 76 39.5
Sabra16G0034200 Salix brachista HOM05D000519 ORTHO05D001210 6.1e-06 55.5 60 43.3
Sp3g10620 Schrenkiella parvula HOM05D000519 ORTHO05D001210 6.1e-06 55.5 76 39.5
TPR.G16763 Trifolium pratense HOM05D000519 ORTHO05D001210 6.1e-06 55.5 68 36.8
TPR.G23182 Trifolium pratense HOM05D000519 ORTHO05D001210 6.1e-06 55.5 62 41.9
TAR623G0619 Trochodendron aralioides HOM05D000519 ORTHO05D001210 6.1e-06 55.5 85 36.5
arahy.Tifrunner.gnm1.ann1.MLA72C Arachis hypogaea HOM05D000519 ORTHO05D001210 8.0e-06 55.1 68 42.6
Cpa.g.sc34.199 Carica papaya HOM05D000519 ORTHO05D001210 8.0e-06 55.1 85 36.5
CiPaw.13G146400 Carya illinoinensis HOM05D000519 ORTHO05D001210 8.0e-06 55.1 68 39.7
Ciclev10017285m.g Citrus clementina HOM05D000519 ORTHO05D001210 8.0e-06 55.1 78 38.5
Eucgr.B03762 Eucalyptus grandis HOM05D000519 ORTHO05D001210 8.0e-06 55.1 79 38.0
Thhalv10017418m.g Eutrema salsugineum HOM05D000519 ORTHO05D001210 8.0e-06 55.1 79 38.0
FAN10G1451 Fragaria x ananassa HOM05D000519 ORTHO05D001210 8.0e-06 55.1 69 39.1
Lj2A411T30 Lonicera japonica HOM05D000519 ORTHO05D001210 8.0e-06 55.1 83 36.1
Manes.08G063200 Manihot esculenta HOM05D000519 ORTHO05D001210 8.0e-06 55.1 74 40.5
QL01p016007 Quercus lobata HOM05D000519 ORTHO05D001210 8.0e-06 55.1 74 36.5
QL04p021809 Quercus lobata HOM05D000519 ORTHO05D001210 8.0e-06 55.1 60 43.3
Rhsim13G0213200 Rhododendron simsii HOM05D000519 ORTHO05D001210 8.0e-06 55.1 70 41.4
SalBow6G4410 Salvia bowleyana HOM05D000519 ORTHO05D001210 8.0e-06 55.1 85 38.8
Sed0025658 Sechium edule HOM05D000519 ORTHO05D001210 8.0e-06 55.1 74 39.2
Sc13g0000890 Simmondsia chinensis HOM05D000519 ORTHO05D001210 8.0e-06 55.1 79 39.2
TAR636G0712 Trochodendron aralioides HOM05D000519 ORTHO05D001210 8.0e-06 55.1 79 38.0


User provided reference genes

Program Settings