Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 0.0e+00 1925.2 1033 100.0
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 9.5e-150 535.4 1189 36.5
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 9.0e-124 449.1 1173 33.9
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 6.5e-114 416.4 984 36.4
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.8e-76 292.0 1153 29.1
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 9.5e-49 199.9 198 55.1
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.4e-47 196.1 1104 26.4
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 3.7e-45 188.0 1225 24.8
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 7.6e-38 163.7 413 35.8
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 9.9e-38 163.3 1265 25.3
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.3e-37 162.9 1226 23.8
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 2.2e-37 162.2 1224 24.4
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 6.0e-35 154.1 564 30.0
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 7.8e-35 153.7 1265 23.6
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 1.3e-34 152.9 561 30.7
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 1.7e-34 152.5 1206 25.0
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 3.0e-34 151.8 391 33.8
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.1e-33 149.8 1130 25.1
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.6e-32 146.0 1199 24.6
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 6.2e-32 144.1 547 29.4
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 3.1e-31 141.7 1197 24.6
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 4.0e-31 141.4 477 32.7
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 5.2e-31 141.0 1084 24.3
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 1.2e-30 139.8 535 30.8
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.5e-30 139.4 535 30.8
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 9.9e-30 136.7 1034 25.5
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 2.9e-29 135.2 364 34.9
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 6.4e-29 134.0 508 30.9
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 8.4e-29 133.7 506 31.0
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.9e-28 132.5 1102 24.0
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 2.4e-28 132.1 398 31.4
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 3.2e-28 131.7 443 31.4
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 4.2e-28 131.3 912 24.6
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 7.1e-28 130.6 557 31.1
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 1.6e-27 129.4 73 80.8
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 1.6e-27 129.4 1279 23.8
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 3.5e-27 128.3 1169 25.0
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 2.3e-26 125.6 1213 24.2
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 3.0e-26 125.2 436 32.6
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 3.0e-26 125.2 375 33.3
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 3.9e-26 124.8 407 31.4
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 6.6e-26 124.0 1315 24.2
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 1.5e-25 122.9 400 32.2
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 3.6e-24 118.2 64 81.2
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.8e-24 117.9 391 32.5
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 6.2e-24 117.5 391 31.7
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 8.1e-24 117.1 429 31.7
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.8e-23 115.9 488 30.9
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.8e-23 115.9 361 32.4
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 3.1e-23 115.2 63 81.0
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 4.0e-23 114.8 63 79.4
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.0e-23 114.8 63 79.4
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 6.9e-23 114.0 64 76.6
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 9.0e-23 113.6 67 73.1
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.2e-22 113.2 448 30.6
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 1.2e-22 113.2 63 77.8
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 2.0e-22 112.5 66 78.8
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 2.0e-22 112.5 1169 23.9
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 2.6e-22 112.1 173 42.8
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 2.6e-22 112.1 365 31.8
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 4.4e-22 111.3 66 78.8
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 7.6e-22 110.5 1231 22.8
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 7.6e-22 110.5 185 41.1
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 7.6e-22 110.5 403 31.3
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 1.3e-21 109.8 1229 23.9
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.3e-21 109.8 206 35.0
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 1.7e-21 109.4 66 75.8
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 2.9e-21 108.6 542 28.4
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 2.9e-21 108.6 176 43.2
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.8e-21 108.2 62 79.0
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 6.4e-21 107.5 479 28.6
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 8.4e-21 107.1 469 27.7
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 8.4e-21 107.1 73 72.6
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 3.2e-20 105.1 71 69.0
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 5.4e-20 104.4 1189 23.5
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 7.1e-20 104.0 391 30.2
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.6e-19 102.8 68 73.5
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 2.1e-19 102.4 74 67.6
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 2.1e-19 102.4 66 74.2
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 2.7e-19 102.1 74 67.6
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 2.7e-19 102.1 71 71.8
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 6.0e-19 100.9 72 72.2
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 1.0e-18 100.1 67 76.1
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.0e-18 100.1 69 62.3
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.3e-18 99.8 391 29.2
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.7e-18 99.4 1026 23.7
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 2.3e-18 99.0 322 31.4
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 2.3e-18 99.0 71 69.0
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 3.0e-18 98.6 62 69.4
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 3.0e-18 98.6 172 39.0
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 3.9e-18 98.2 170 38.8
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 5.1e-18 97.8 108 47.2
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 5.1e-18 97.8 64 73.4
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.5e-17 96.3 74 62.2
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 1.9e-17 95.9 67 65.7
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 9.6e-17 93.6 90 51.1
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 1.6e-16 92.8 206 35.4
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.8e-15 89.4 1297 22.2
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 9.0e-15 87.0 307 30.6
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.5e-14 86.3 385 30.9
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 1.7e-13 82.8 154 41.6
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.2e-13 82.4 61 65.6
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 2.2e-13 82.4 71 53.5
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 2.9e-13 82.0 1156 22.4
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.8e-13 81.6 60 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 1.4e-12 79.7 57 63.2
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.9e-12 79.3 396 25.8
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 1.2e-11 76.6 211 34.1
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 2.7e-11 75.5 525 26.5
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 3.5e-11 75.1 48 75.0
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.0e-11 74.3 570 24.4
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 1.0e-10 73.6 62 61.3
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 7.4e-09 67.4 392 25.8
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 1.6e-08 66.2 439 26.7
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 3.7e-08 65.1 43 74.4
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.1e-07 63.5 57 54.4
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 3.1e-07 62.0 86 46.5
Os11g0103100 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 4.0e-07 61.6 84 40.5
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 6.9e-07 60.8 87 42.5
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 6.9e-07 60.8 74 48.6
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 6.9e-07 60.8 447 25.1
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 9.0e-07 60.5 57 52.6
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.2e-06 60.1 55 58.2
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 2.0e-06 59.3 57 50.9
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 2.0e-06 59.3 63 50.8
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.0e-06 59.3 451 27.3
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 2.0e-06 59.3 137 37.2
Zm00001eb246740 Zea mays HOM05D006507 ORTHO05D007296 2.0e-06 59.3 51 58.8
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 2.6e-06 58.9 113 40.7
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 2.6e-06 58.9 110 40.9
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 3.4e-06 58.5 87 39.1
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 3.4e-06 58.5 70 51.4
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 3.4e-06 58.5 51 58.8
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 4.5e-06 58.2 114 38.6
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 4.5e-06 58.2 207 27.5
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 7.6e-06 57.4 59 52.5
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 1.0e-05 57.0 87 41.4
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 1.0e-05 57.0 125 34.4
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 1.0e-05 57.0 72 52.8


User provided reference genes

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