Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 3.3e-297 1024.2 507 100.0
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.8e-205 719.5 507 74.4
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.6e-187 659.8 516 68.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 5.0e-184 648.3 512 67.2
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.8e-163 579.3 478 65.9
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 4.7e-158 562.0 434 65.9
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.4e-157 560.5 434 65.4
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 8.8e-157 557.8 508 60.0
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 8.3e-155 551.2 519 57.6
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 1.4e-154 550.4 513 58.3
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.1e-154 549.3 506 57.5
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.2e-153 547.4 518 57.7
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.2e-153 547.4 508 57.5
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.2e-153 547.4 506 57.1
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.6e-153 547.0 520 57.9
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 2.7e-153 546.2 506 57.3
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 4.5e-153 545.4 506 57.3
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 5.9e-153 545.0 451 61.6
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 7.7e-153 544.7 505 56.4
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.0e-152 544.3 507 57.4
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 6.5e-152 541.6 443 63.0
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.1e-151 540.8 512 58.6
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.9e-151 540.0 480 58.8
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 2.5e-151 539.7 518 56.2
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 2.5e-151 539.7 431 63.1
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 5.5e-151 538.5 508 56.9
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 9.4e-151 537.7 456 61.6
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.2e-150 537.3 507 56.6
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.6e-150 537.0 509 56.6
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.6e-150 537.0 504 56.5
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.1e-150 536.6 504 57.3
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.1e-150 536.6 507 56.0
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 6.1e-150 535.0 504 56.3
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 8.0e-150 534.6 507 56.8
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 8.0e-150 534.6 522 55.9
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.0e-149 534.3 432 62.0
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.4e-149 533.9 436 61.5
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.4e-149 533.9 520 55.4
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.8e-149 533.5 507 56.2
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 3.0e-149 532.7 509 56.4
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 5.2e-149 531.9 507 55.6
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 6.8e-149 531.6 512 56.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.5e-148 530.4 506 55.5
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 2.6e-148 529.6 481 58.4
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 3.4e-148 529.3 506 55.5
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.4e-148 529.3 513 57.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.7e-147 526.9 512 56.1
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.7e-147 526.9 476 57.8
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.7e-147 526.9 516 55.8
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.8e-147 526.2 465 58.5
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.4e-146 523.9 482 56.8
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 3.1e-146 522.7 508 55.9
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 4.1e-146 522.3 432 62.0
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.0e-145 520.0 524 54.8
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 5.9e-145 518.5 500 56.6
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.9e-144 516.2 433 61.2
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.8e-144 515.8 432 60.6
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.8e-144 515.8 430 60.2
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 6.6e-144 515.0 508 54.5
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.6e-144 515.0 473 57.1
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.5e-143 513.1 482 57.1
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.2e-143 512.3 512 54.9
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 5.5e-143 511.9 433 60.7
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 7.2e-143 511.5 443 60.5
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 9.5e-143 511.1 431 60.6
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 9.5e-143 511.1 450 59.6
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.2e-142 510.8 476 56.9
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.2e-142 510.8 441 60.1
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.2e-142 510.8 443 60.0
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.1e-142 510.0 442 60.0
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 4.7e-142 508.8 506 55.5
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 4.0e-141 505.8 491 56.4
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 6.8e-141 505.0 417 61.4
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 3.7e-139 499.2 379 65.7
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.9e-139 498.8 433 59.6
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.4e-138 497.3 520 53.1
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.2e-137 494.2 450 56.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-137 494.2 384 63.3
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.9e-136 489.6 529 53.1
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.9e-136 489.6 419 58.7
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 6.6e-136 488.4 378 64.0
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.1e-135 487.6 515 52.0
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.9e-135 486.9 526 53.2
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.9e-135 486.9 480 56.9
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 9.5e-135 484.6 417 57.1
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 9.5e-135 484.6 510 52.2
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 6.8e-133 478.4 480 53.3
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 7.5e-132 474.9 463 55.7
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.1e-130 471.1 469 56.3
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 3.2e-130 469.5 502 54.2
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 3.9e-128 462.6 429 55.7
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 4.0e-125 452.6 503 52.1
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 4.9e-123 445.7 452 54.4
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 7.8e-121 438.3 361 60.4
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.6e-120 435.3 499 49.9
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 7.6e-116 421.8 433 54.5
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.9e-114 417.2 327 64.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 5.6e-111 405.6 508 48.2
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.1e-102 377.1 368 53.8
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 2.1e-102 377.1 409 47.7
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 4.0e-101 372.9 475 47.2
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 4.2e-98 362.8 468 46.6
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.3e-94 351.3 479 46.3
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 8.7e-88 328.6 217 72.4
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.5e-87 327.8 218 71.6
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 3.3e-87 326.6 478 43.7
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.1e-85 321.6 379 50.7
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 5.1e-80 302.8 326 53.7
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.3e-78 298.1 449 39.4
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.1e-77 295.0 414 42.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.1e-73 280.8 180 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 4.3e-71 273.1 431 37.8
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 2.0e-68 264.2 183 69.9
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.9e-66 257.7 368 44.3
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.5e-66 257.3 345 45.8
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 5.1e-64 249.6 255 54.5
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 6.3e-62 242.7 259 54.8
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 6.3e-62 242.7 259 51.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.8e-61 241.1 259 52.1
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 2.4e-61 240.7 318 40.6
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 7.2e-58 229.2 259 51.0
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 5.5e-50 203.0 190 56.8
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 3.3e-47 193.7 320 40.0
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.2e-39 168.7 132 62.9
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.2e-38 164.5 197 50.8
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 4.8e-38 163.3 281 38.4
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 2.3e-32 144.4 88 72.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.1e-29 134.0 75 81.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 4.9e-22 110.2 85 64.7
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 7.0e-21 106.3 142 46.5
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 7.0e-21 106.3 408 28.4
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.0e-19 102.4 71 71.8
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.2e-17 95.5 62 71.0
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 4.0e-16 90.5 104 47.1
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 8.9e-16 89.4 55 74.5
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.4e-13 82.0 73 58.9
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-09 68.6 65 52.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 2.8e-09 67.8 39 76.9
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 1.8e-08 65.1 112 33.0
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.2e-07 62.4 118 29.7
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 3.4e-07 60.8 75 41.3
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 4.4e-07 60.5 32 87.5
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 7.5e-07 59.7 48 56.2


User provided reference genes

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