Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 0.0e+00 2655.6 1430 100.0
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 0.0e+00 1083.9 1614 48.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 8.5e-298 1027.7 1614 46.7
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.4e-284 983.8 1629 45.1
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.3e-284 981.9 1629 45.0
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 3.2e-220 770.0 1573 40.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 9.0e-215 751.9 1653 39.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 3.3e-209 733.4 1630 39.6
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 5.1e-202 709.5 1494 39.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 5.1e-194 682.9 1585 38.0
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 5.1e-186 656.4 1723 35.3
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 5.5e-180 636.3 1553 36.6
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 7.9e-179 632.5 1709 35.5
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.2e-174 618.6 1636 36.6
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.7e-174 615.9 1626 36.3
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 7.7e-174 615.9 1615 36.0
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 7.2e-172 609.4 1322 37.0
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.2e-171 608.6 1625 36.4
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 2.6e-169 600.9 1647 35.8
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 8.2e-168 595.9 1672 35.8
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.4e-167 595.1 1648 35.3
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.8e-167 594.7 1648 35.4
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 4.1e-167 593.6 1649 35.5
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.2e-166 592.0 1648 35.7
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.7e-165 588.2 1631 36.7
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 4.7e-163 580.1 1564 35.5
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 8.0e-163 579.3 1603 35.1
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.4e-161 573.9 1628 35.4
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.4e-161 573.9 1660 34.9
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 7.7e-158 562.8 1621 34.6
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 3.2e-156 557.4 1659 34.8
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.2e-156 556.2 1628 34.5
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 8.8e-154 549.3 1672 34.2
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 7.5e-153 546.2 1649 34.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.7e-152 543.9 1653 32.9
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 6.3e-152 543.1 1597 34.8
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.3e-152 543.1 1691 33.7
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 5.9e-150 536.6 1454 36.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.3e-149 535.4 1714 33.4
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 2.3e-149 534.6 1507 34.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 2.3e-149 534.6 1595 33.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 8.6e-149 532.7 1660 34.2
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.5e-148 529.3 1618 34.2
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 4.0e-146 523.9 1743 33.5
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.8e-146 523.1 1597 33.4
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 6.8e-146 523.1 1548 33.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 7.5e-145 519.6 1660 33.7
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 9.8e-145 519.2 1587 33.8
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 9.8e-145 519.2 1697 33.3
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.3e-144 518.8 1640 34.0
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 7.0e-143 513.1 1585 33.5
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.0e-142 511.5 1581 33.6
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.7e-142 511.1 1615 33.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.6e-142 510.4 1626 33.9
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 6.6e-141 506.5 1673 32.4
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.9e-140 505.0 1556 34.6
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.1e-138 497.7 1737 32.4
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.4e-137 494.2 1592 34.0
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.8e-137 493.4 1626 33.3
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.0e-135 486.5 1620 33.9
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.0e-134 485.0 1698 33.0
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.7e-134 484.6 1479 33.7
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 6.6e-133 479.9 1479 34.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.3e-132 476.5 1643 32.1
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.8e-130 471.9 1621 32.5
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 2.0e-129 468.4 1524 32.8
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 9.8e-129 466.1 1594 31.5
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.7e-128 464.2 1648 34.2
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.9e-127 461.8 1668 33.3
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 3.0e-125 454.5 1577 32.7
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 2.5e-124 451.4 1625 32.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 4.3e-124 450.7 1570 32.0
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 4.0e-122 444.1 1579 33.2
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.9e-122 443.0 1583 31.0
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 7.6e-121 439.9 1587 31.9
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.7e-120 438.7 1629 31.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 2.9e-120 438.0 1556 33.0
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 3.8e-120 437.6 1627 31.6
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 5.1e-117 427.2 1598 32.7
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 4.3e-116 424.1 1590 31.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.5e-113 415.6 1633 31.7
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.4e-113 414.1 1122 34.7
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 6.4e-112 410.2 1580 31.4
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 8.4e-112 409.8 1706 31.1
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 4.2e-111 407.5 1713 30.6
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.6e-110 405.6 1353 32.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.1e-108 399.4 1482 31.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 4.3e-108 397.5 1527 30.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 7.3e-108 396.7 1532 31.1
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 3.6e-107 394.4 718 40.9
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 9.9e-105 386.3 1547 29.2
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 8.4e-104 383.3 1560 28.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 3.3e-100 371.3 1552 28.9
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 3.3e-100 371.3 1616 30.4
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 5.3e-98 364.0 1561 28.4
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 9.0e-98 363.2 1560 28.4
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 7.6e-97 360.1 1567 28.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 9.9e-97 359.8 1388 32.2
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 7.1e-95 353.6 1563 28.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 7.1e-95 353.6 1536 30.8
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 9.3e-95 353.2 1562 28.3
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.2e-94 352.8 1510 29.3
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 1.6e-94 352.4 1458 29.6
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.4e-92 343.6 1546 30.1
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.8e-90 339.0 1521 28.5
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.2e-88 332.0 1523 27.4
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 2.5e-87 328.6 752 37.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 9.3e-87 326.6 1610 27.5
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.6e-86 325.9 1529 27.9
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 7.9e-86 323.6 1532 28.4
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.7e-85 320.1 958 33.9
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.1e-84 319.7 1590 27.2
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.2e-83 315.5 1555 26.8
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.1e-82 313.2 1593 29.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.5e-81 309.3 1502 31.4
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.0e-81 308.9 915 32.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 3.8e-80 304.7 1335 29.7
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 8.5e-80 303.5 1619 30.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.1e-74 286.6 1325 29.7
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.5e-72 276.9 334 52.4
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.5e-68 266.2 1507 26.9
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 7.7e-65 253.8 1232 29.5
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 8.5e-64 250.4 1413 28.2
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.2e-63 248.4 210 67.1
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 2.3e-61 242.3 669 32.6
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.2e-57 229.9 200 62.5
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.0e-56 226.9 195 63.6
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.4e-50 205.7 1428 26.8
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.1e-47 196.8 1448 27.5
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 3.2e-47 195.3 1482 25.2
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.2e-47 194.1 203 54.2
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 4.4e-44 184.9 1566 25.2
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.4e-42 179.1 1551 25.5
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.1e-42 178.7 215 57.2
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-34 152.9 511 31.3
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.3e-32 146.0 732 27.6
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.8e-32 145.2 1426 24.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.0e-32 144.8 388 34.0
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 5.0e-32 144.8 1640 25.2
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.7e-30 138.3 402 35.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 4.0e-29 135.2 237 39.7
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.9e-27 129.0 88 73.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 6.4e-27 127.9 268 42.2
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.1e-21 109.0 496 30.6
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.0e-16 94.0 764 27.1
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.3e-16 92.8 243 36.6
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.0e-16 92.4 1532 24.3
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 2.5e-15 89.4 1025 26.9
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.7e-11 76.6 388 31.4
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.9e-10 73.2 143 37.8
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 8.6e-08 64.3 236 32.2
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 8.6e-08 64.3 109 40.4


User provided reference genes

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