Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04123 Striga asiatica HOM05D005048 ORTHO05D006420 5.5e-62 240.7 116 100.0
SGA_v2.0_scaffold58G20419 Striga asiatica HOM05D005048 ORTHO05D006420 6.7e-28 127.5 64 95.3
Migut.D01920 Erythranthe guttata HOM05D005048 ORTHO05D006420 2.6e-27 125.6 77 79.2
SalBow2G2764 Salvia bowleyana HOM05D005048 ORTHO05D006420 3.2e-22 108.6 85 65.9
Oeu026966.2 Olea europaea HOM05D005048 ORTHO05D006420 9.4e-22 107.1 81 66.7
TWI60G0019 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 8.0e-21 104.0 77 67.5
TWI81G0001 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 1.2e-19 100.1 77 64.9
PGR102G2767 Punica granatum HOM05D005048 ORTHO05D006420 1.5e-19 99.8 77 66.2
Dinv36669 Davidia involucrata HOM05D005048 ORTHO05D006420 7.5e-19 97.4 78 65.4
QL10p015858 Quercus lobata HOM05D005048 ORTHO05D006420 7.5e-19 97.4 77 66.2
CiPaw.04G161700 Carya illinoinensis HOM05D005048 ORTHO05D006420 9.7e-19 97.1 77 64.9
Atru.chr7.1383 Acer truncatum HOM05D005048 ORTHO05D006420 1.7e-18 96.3 77 66.2
Cc01_g04910 Coffea canephora HOM05D005048 ORTHO05D006420 2.8e-18 95.5 77 63.6
Gohir.A07G004800 Gossypium hirsutum HOM05D005048 ORTHO05D006420 3.7e-18 95.1 77 64.9
Solyc01g102490.3 Solanum lycopersicum HOM05D005048 ORTHO05D006420 8.3e-18 94.0 82 59.8
Gohir.D07G007400 Gossypium hirsutum HOM05D005048 ORTHO05D006420 1.1e-17 93.6 77 63.6
Gorai.001G007100 Gossypium raimondii HOM05D005048 ORTHO05D006420 1.1e-17 93.6 77 63.6
Sopen01g044930 Solanum pennellii HOM05D005048 ORTHO05D006420 1.1e-17 93.6 82 59.8
arahy.Tifrunner.gnm1.ann1.T6QICJ Arachis hypogaea HOM05D005048 ORTHO05D006420 1.4e-17 93.2 76 60.5
arahy.Tifrunner.gnm1.ann1.TTP0Q7 Arachis hypogaea HOM05D005048 ORTHO05D006420 1.4e-17 93.2 76 60.5
Actinidia32670 Actinidia chinensis HOM05D005048 ORTHO05D006420 1.8e-17 92.8 80 65.0
Ciclev10008139m.g Citrus clementina HOM05D005048 ORTHO05D006420 1.8e-17 92.8 77 63.6
DCAR_009632 Daucus carota HOM05D005048 ORTHO05D006420 1.8e-17 92.8 77 64.9
Cpa.g.sc23.64 Carica papaya HOM05D005048 ORTHO05D006420 2.4e-17 92.4 83 61.4
ECA240G4205 Erigeron canadensis HOM05D005048 ORTHO05D006420 2.4e-17 92.4 78 61.5
Eucgr.C03804 Eucalyptus grandis HOM05D005048 ORTHO05D006420 2.4e-17 92.4 77 63.6
GSVIVG01015352001 Vitis vinifera HOM05D005048 ORTHO05D006420 3.1e-17 92.0 77 63.6
BcaB08g35458 Brassica carinata HOM05D005048 ORTHO05D006420 5.3e-17 91.3 79 60.8
AL7G19480 Arabidopsis lyrata HOM05D005048 ORTHO05D006420 7.0e-17 90.9 79 58.2
CAN.G1379.35 Capsicum annuum HOM05D005048 ORTHO05D006420 7.0e-17 90.9 82 58.5
Prupe.7G225700 Prunus persica HOM05D005048 ORTHO05D006420 7.0e-17 90.9 78 61.5
Hund09223 Selenicereus undatus HOM05D005048 ORTHO05D006420 7.0e-17 90.9 77 64.9
PGSC0003DMG400018273 Solanum tuberosum HOM05D005048 ORTHO05D006420 7.0e-17 90.9 82 58.5
Thecc.09G106000 Theobroma cacao HOM05D005048 ORTHO05D006420 9.1e-17 90.5 77 62.3
Haze_25781 Corylus avellana HOM05D005048 ORTHO05D006420 1.2e-16 90.1 77 59.7
RcHm_v2.0_Chr2g0091251 Rosa chinensis HOM05D005048 ORTHO05D006420 1.2e-16 90.1 77 63.6
Sc08g0007680 Simmondsia chinensis HOM05D005048 ORTHO05D006420 1.2e-16 90.1 77 61.0
Aa31LG2G18290 Aethionema arabicum HOM05D005048 ORTHO05D006420 1.6e-16 89.7 82 58.5
COL.COLO4_37106 Corchorus olitorius HOM05D005048 ORTHO05D006420 1.6e-16 89.7 77 62.3
FAN23G2083 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.6e-16 89.7 77 62.3
FAN28G0981 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.6e-16 89.7 77 62.3
Nitab4.5_0004090g0040 Nicotiana tabacum HOM05D005048 ORTHO05D006420 2.0e-16 89.4 82 58.5
Sp7g30130 Schrenkiella parvula HOM05D005048 ORTHO05D006420 2.0e-16 89.4 78 59.0
THA.LOC104799066 Tarenaya hassleriana HOM05D005048 ORTHO05D006420 2.0e-16 89.4 80 56.2
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 2.7e-16 89.0 79 59.5
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 2.7e-16 89.0 79 59.5
Hma1.2p1_1151F.1_g261870 Hydrangea macrophylla HOM05D005048 ORTHO05D006420 2.7e-16 89.0 77 58.4
MD02G1057100 Malus domestica HOM05D005048 ORTHO05D006420 2.7e-16 89.0 79 62.0
CARHR240280 Cardamine hirsuta HOM05D005048 ORTHO05D006420 3.5e-16 88.6 78 57.7
FAN26G2936 Fragaria x ananassa HOM05D005048 ORTHO05D006420 3.5e-16 88.6 77 61.0
Carub.0007s0821 Capsella rubella HOM05D005048 ORTHO05D006420 4.5e-16 88.2 78 56.4
FvH4_1g05561 Fragaria vesca HOM05D005048 ORTHO05D006420 4.5e-16 88.2 77 61.0
FAN19G2567 Fragaria x ananassa HOM05D005048 ORTHO05D006420 4.5e-16 88.2 77 61.0
Nitab4.5_0000399g0090 Nicotiana tabacum HOM05D005048 ORTHO05D006420 4.5e-16 88.2 82 57.3
Aqoxy5G01302 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 7.7e-16 87.4 78 62.8
C09p39250 Brassica napus HOM05D005048 ORTHO05D006420 1.0e-15 87.0 78 60.3
BolC9t56804H Brassica oleracea HOM05D005048 ORTHO05D006420 1.0e-15 87.0 78 60.3
Ca_17323_v3 Cicer arietinum L. HOM05D005048 ORTHO05D006420 1.0e-15 87.0 78 61.5
Cfa003227 Carpinus fangiana HOM05D005048 ORTHO05D006420 1.3e-15 86.7 79 55.7
FvH4_1g05550 Fragaria vesca HOM05D005048 ORTHO05D006420 1.3e-15 86.7 77 61.0
AT4G32360 Arabidopsis thaliana HOM05D005048 ORTHO05D006420 1.7e-15 86.3 78 55.1
Peaxi162Scf00231g00512 Petunia axillaris HOM05D005048 ORTHO05D006420 1.7e-15 86.3 82 59.8
HanXRQChr03g0061391 Helianthus annuus HOM05D005048 ORTHO05D006420 2.2e-15 85.9 78 59.0
Lsat_1_v5_gn_7_41421 Lactuca sativa HOM05D005048 ORTHO05D006420 2.2e-15 85.9 77 59.7
MD15G1191600 Malus domestica HOM05D005048 ORTHO05D006420 2.2e-15 85.9 77 61.0
Potri.017G118801 Populus trichocarpa HOM05D005048 ORTHO05D006420 2.2e-15 85.9 77 59.7
AUR62021458 Chenopodium quinoa HOM05D005048 ORTHO05D006420 3.8e-15 85.1 77 61.0
CsaV3_3G010630 Cucumis sativus L. HOM05D005048 ORTHO05D006420 3.8e-15 85.1 78 60.3
ClCG05G003020 Citrullus lanatus HOM05D005048 ORTHO05D006420 5.0e-15 84.7 78 59.0
unitig_0.g799 Utricularia gibba HOM05D005048 ORTHO05D006420 5.0e-15 84.7 81 58.0
CSS0046369 Camellia sinensis var. sinensis HOM05D005048 ORTHO05D006420 8.5e-15 84.0 105 51.4
Lj4g0020985 Lotus japonicus HOM05D005048 ORTHO05D006420 8.5e-15 84.0 77 57.1
MELO3C006282.2 Cucumis melo HOM05D005048 ORTHO05D006420 1.1e-14 83.6 78 59.0
Rhsim03G0239600 Rhododendron simsii HOM05D005048 ORTHO05D006420 1.5e-14 83.2 77 61.0
Sed0003567 Sechium edule HOM05D005048 ORTHO05D006420 1.9e-14 82.8 79 58.2
MBI01_g38807_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 2.5e-14 82.4 81 60.5
Lj7C657T4 Lonicera japonica HOM05D005048 ORTHO05D006420 3.2e-14 82.0 66 62.1
Oeu035980.2 Olea europaea HOM05D005048 ORTHO05D006420 3.2e-14 82.0 65 66.2
Psat7g014800 Pisum sativum HOM05D005048 ORTHO05D006420 4.2e-14 81.6 78 57.7
Lalb_Chr05g0223041 Lupinus albus HOM05D005048 ORTHO05D006420 5.5e-14 81.3 78 55.1
TPR.G23489 Trifolium pratense HOM05D005048 ORTHO05D006420 7.2e-14 80.9 78 57.7
Aqoxy1G00313 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 9.4e-14 80.5 78 59.0
Glyma.05G229400 Glycine max HOM05D005048 ORTHO05D006420 1.6e-13 79.7 78 57.7
Glyma.14G218300 Glycine max HOM05D005048 ORTHO05D006420 1.6e-13 79.7 78 57.7
Manes.14G158111 Manihot esculenta HOM05D005048 ORTHO05D006420 1.6e-13 79.7 77 58.4
Medtr8g103060 Medicago truncatula HOM05D005048 ORTHO05D006420 1.6e-13 79.7 78 57.7
Sabra17G0098100 Salix brachista HOM05D005048 ORTHO05D006420 2.1e-13 79.3 65 64.6
TAR383G0565 Trochodendron aralioides HOM05D005048 ORTHO05D006420 2.1e-13 79.3 78 57.7
Ah.14g082380 Amaranthus hybridus HOM05D005048 ORTHO05D006420 2.7e-13 79.0 88 50.0
CDE05G1289 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 2.7e-13 79.0 77 51.9
Thhalv10013379m.g Eutrema salsugineum HOM05D005048 ORTHO05D006420 2.7e-13 79.0 75 53.3
Nn2g11663 Nelumbo nucifera HOM05D005048 ORTHO05D006420 2.7e-13 79.0 78 56.4
PSO210G5559 Papaver somniferum HOM05D005048 ORTHO05D006420 2.7e-13 79.0 77 57.1
VMungo0251G3001 Vigna mungo HOM05D005048 ORTHO05D006420 6.1e-13 77.8 77 55.8
PSO210G2605 Papaver somniferum HOM05D005048 ORTHO05D006420 8.0e-13 77.4 64 60.9
Zm00001eb203380 Zea mays HOM05D005048 ORTHO05D006420 1.0e-12 77.0 77 59.7
Zm00001eb203390 Zea mays HOM05D005048 ORTHO05D006420 1.0e-12 77.0 77 59.7
Zm00001eb203400 Zea mays HOM05D005048 ORTHO05D006420 1.0e-12 77.0 77 59.7
Phvul.002G311600 Phaseolus vulgaris HOM05D005048 ORTHO05D006420 1.8e-12 76.3 77 55.8
EL10Ac8g18435 Beta vulgaris HOM05D005048 ORTHO05D006420 3.0e-12 75.5 65 60.0
Os02g0277600 Oryza sativa ssp. japonica HOM05D005048 ORTHO05D006420 2.0e-11 72.8 79 59.5
HPP92_003926 Vanilla planifolia HOM05D005048 ORTHO05D006420 2.8e-10 68.9 78 52.6
SHI02718 Sapria himalayana HOM05D005048 ORTHO05D006420 4.8e-10 68.2 69 52.2
SEGI_20206 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 6.3e-10 67.8 79 57.0
SEGI_35536 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 6.3e-10 67.8 79 57.0
BcaC04g20784 Brassica carinata HOM05D005048 ORTHO05D006420 3.1e-09 65.5 49 63.3
Duzib168G1040 Durio zibethinus HOM05D005048 ORTHO05D006420 3.1e-09 65.5 57 57.9
ATR0315G096 Amborella trichopoda HOM05D005048 ORTHO05D006420 7.0e-09 64.3 78 51.3
SGA_v2.0_scaffold29G12330 Striga asiatica HOM05D005048 ORTHO05D019217 7.0e-09 64.3 38 89.5
Pp3c9_14820 Physcomitrium patens HOM05D005048 ORTHO05D006420 2.9e-07 58.9 81 46.9
FAN28G0458 Fragaria x ananassa HOM05D005048 ORTHO05D006420 8.6e-07 57.4 47 57.4


User provided reference genes

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