Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 8.0e-129 463.8 234 100.0
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 9.9e-87 323.9 243 70.4
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 1.9e-82 309.7 199 77.4
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 6.9e-80 301.2 216 71.8
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 2.6e-79 299.3 230 69.1
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 3.4e-79 298.9 236 66.5
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 3.4e-79 298.9 194 78.9
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 4.5e-79 298.5 231 68.8
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 5.8e-79 298.1 220 70.5
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 7.6e-79 297.7 196 74.5
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.3e-78 297.0 199 74.4
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 2.9e-78 295.8 225 68.4
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 3.8e-78 295.4 195 73.8
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 6.4e-78 294.7 221 70.1
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 6.4e-78 294.7 178 80.3
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 8.4e-78 294.3 211 71.1
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 8.4e-78 294.3 191 77.0
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.4e-77 293.5 177 80.2
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.4e-77 293.5 178 80.3
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 1.9e-77 293.1 178 77.5
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 2.4e-77 292.7 213 70.0
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 4.2e-77 292.0 220 70.0
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 7.1e-77 291.2 176 78.4
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 7.1e-77 291.2 198 73.2
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.6e-76 290.0 178 77.5
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 6.0e-76 288.1 177 79.7
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 1.0e-75 287.3 177 79.7
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 8.7e-75 284.3 190 73.7
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.5e-74 283.5 238 62.6
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 2.5e-74 282.7 191 75.4
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 5.6e-74 281.6 178 77.5
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 7.4e-74 281.2 194 71.1
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.6e-74 280.8 230 62.6
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 3.6e-73 278.9 178 74.7
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 4.8e-73 278.5 178 76.4
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 8.1e-73 277.7 194 70.1
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.1e-72 277.3 173 75.1
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.4e-72 276.9 194 70.1
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 3.1e-72 275.8 178 74.2
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 4.0e-72 275.4 178 72.5
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 4.0e-72 275.4 184 71.7
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 6.9e-72 274.6 216 65.3
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 9.0e-72 274.2 203 69.0
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.2e-71 273.9 178 74.2
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 4.5e-71 271.9 213 66.7
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 4.5e-71 271.9 181 75.7
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 4.5e-71 271.9 181 70.7
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 4.5e-71 271.9 180 70.6
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 4.5e-71 271.9 177 75.1
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 7.6e-71 271.2 181 75.1
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 7.6e-71 271.2 180 70.6
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 7.6e-71 271.2 176 76.1
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 9.9e-71 270.8 183 72.1
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 1.7e-70 270.0 248 62.5
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 2.9e-70 269.2 177 73.4
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 4.9e-70 268.5 178 73.0
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 6.4e-70 268.1 180 68.9
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-69 267.3 187 69.5
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.1e-69 267.3 187 69.5
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 2.4e-69 266.2 178 71.3
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 3.2e-69 265.8 178 71.9
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 3.2e-69 265.8 178 71.9
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 3.2e-69 265.8 214 63.6
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 4.2e-69 265.4 178 70.2
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 4.2e-69 265.4 178 71.3
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 4.2e-69 265.4 181 68.5
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 7.1e-69 264.6 177 75.7
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 1.2e-68 263.8 181 71.3
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.2e-68 263.8 240 57.1
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 2.1e-68 263.1 212 61.8
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 2.1e-68 263.1 212 61.8
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 2.7e-68 262.7 178 71.9
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 6.0e-68 261.5 188 68.1
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 6.0e-68 261.5 178 73.0
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 6.0e-68 261.5 218 63.3
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 7.9e-68 261.2 189 67.7
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.0e-67 260.8 162 77.2
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.8e-67 260.0 200 66.5
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.8e-67 260.0 178 71.9
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.8e-67 260.0 181 68.5
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.8e-67 260.0 189 68.3
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 3.9e-67 258.8 180 71.7
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 8.7e-67 257.7 178 71.9
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.5e-66 256.9 180 70.0
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 2.5e-66 256.1 239 59.4
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 3.3e-66 255.8 239 56.5
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 2.1e-65 253.1 183 65.6
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 4.8e-65 251.9 179 66.5
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 8.1e-65 251.1 179 67.0
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 8.1e-65 251.1 188 64.4
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.1e-64 250.8 229 57.6
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 2.4e-64 249.6 184 65.8
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 3.1e-64 249.2 179 67.6
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.5e-63 246.9 171 69.0
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 2.0e-63 246.5 169 71.0
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 3.4e-63 245.7 200 61.5
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.0e-62 244.2 169 68.0
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-62 243.8 165 70.9
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-62 242.7 175 68.0
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 4.9e-62 241.9 224 55.4
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.2e-60 237.3 236 56.8
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 2.1e-60 236.5 184 63.0
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 3.0e-59 232.6 159 72.3
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 8.7e-59 231.1 144 77.1
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.1e-56 224.2 147 74.8
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.1e-56 224.2 147 73.5
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 4.1e-56 222.2 199 59.3
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 1.5e-55 220.3 155 73.5
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 3.8e-54 215.7 155 62.6
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 8.5e-54 214.5 178 61.2
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 3.0e-51 206.1 129 79.8
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 9.1e-48 194.5 146 67.8
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 4.5e-47 192.2 129 72.1
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.3e-46 190.7 127 73.2
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-46 189.5 128 72.7
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 5.5e-45 185.3 159 54.1
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 3.6e-44 182.6 183 55.2
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 6.1e-44 181.8 128 68.0
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 6.1e-44 181.8 128 68.0
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.8e-43 180.3 145 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 4.4e-42 175.6 171 50.9
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 3.2e-37 159.5 95 81.1
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 2.3e-35 153.3 188 48.4
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 3.3e-34 149.4 113 66.4
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 6.3e-33 145.2 82 85.4
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 3.0e-27 126.3 79 73.4
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 9.7e-26 121.3 77 77.9
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 5.0e-22 109.0 110 56.4
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 9.8e-18 94.7 103 48.5
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 1.0e-11 74.7 161 28.0
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 2.3e-11 73.6 50 68.0
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 3.4e-10 69.7 36 80.6
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 5.7e-10 68.9 129 27.9
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 7.5e-10 68.6 50 60.0


User provided reference genes

Program Settings