Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.4e-311 1072.0 514 100.0
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 5.1e-51 206.5 158 71.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-47 194.5 150 70.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.5e-42 177.6 150 63.3
SGA_v2.0_scaffold7G04075 Striga asiatica HOM05D004405 ORTHO05D405533 1.4e-40 171.8 121 67.8
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.4e-39 166.8 158 58.9
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.4e-37 161.8 150 60.0
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.2e-36 158.7 150 57.3
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.7e-36 157.5 152 55.3
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.3e-35 154.5 150 54.7
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 5.1e-35 153.3 150 53.3
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 6.6e-35 152.9 150 55.3
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.9e-34 151.4 150 52.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.9e-34 151.4 200 46.0
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.5e-34 151.0 150 55.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 4.3e-34 150.2 150 52.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 5.6e-34 149.8 150 53.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 7.3e-34 149.4 150 52.0
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 9.6e-34 149.1 150 51.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.6e-34 149.1 150 50.7
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.3e-33 148.7 150 53.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.3e-33 148.7 150 52.7
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-33 148.7 150 52.7
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.3e-33 148.7 150 51.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-33 148.3 150 50.7
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.6e-33 148.3 150 50.7
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 1.6e-33 148.3 166 49.4
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.1e-33 147.9 150 52.7
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.1e-33 147.9 150 52.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.1e-33 147.9 150 52.7
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.8e-33 147.5 150 53.3
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.8e-33 147.5 150 53.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.6e-33 147.1 153 52.3
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.6e-33 147.1 150 52.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 8.1e-33 146.0 150 51.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.1e-33 146.0 150 52.7
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.1e-32 145.6 150 52.0
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.4e-32 145.2 150 52.0
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.4e-32 145.2 168 49.4
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.4e-32 144.4 150 51.3
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.1e-32 144.1 176 47.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.1e-32 144.1 168 48.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.1e-32 144.1 150 50.7
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.1e-32 144.1 150 52.7
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.0e-32 143.7 150 50.0
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.0e-32 143.7 150 50.0
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.3e-32 143.3 179 45.8
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.3e-32 143.3 185 44.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.9e-32 142.9 150 48.7
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 6.9e-32 142.9 150 50.0
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.9e-32 142.9 150 50.0
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 9.0e-32 142.5 150 50.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.2e-31 142.1 145 52.4
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.2e-31 142.1 150 52.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.2e-31 142.1 150 50.7
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.5e-31 141.7 150 51.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.0e-31 141.4 150 51.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.0e-31 141.4 161 47.8
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 2.6e-31 141.0 150 50.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.4e-31 140.6 153 47.7
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 4.4e-31 140.2 150 48.7
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 5.8e-31 139.8 150 50.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.6e-31 139.4 151 49.7
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-30 138.7 150 51.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.3e-30 138.7 173 45.1
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-30 138.3 150 50.0
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-30 138.3 150 50.0
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.7e-30 138.3 238 37.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.7e-30 138.3 168 46.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-30 137.9 149 51.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.2e-30 137.9 149 50.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.2e-30 137.9 150 49.3
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-30 137.5 150 50.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-30 137.5 165 48.5
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-30 137.5 165 48.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-30 137.5 165 48.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.9e-30 137.5 150 50.7
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 3.8e-30 137.1 165 48.5
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.8e-30 137.1 150 49.3
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.8e-30 137.1 180 43.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.8e-30 137.1 150 50.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 3.8e-30 137.1 150 48.7
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 4.9e-30 136.7 150 50.7
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 4.9e-30 136.7 150 50.7
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 4.9e-30 136.7 150 50.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 4.9e-30 136.7 150 50.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.9e-30 136.7 149 50.3
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.4e-30 136.3 149 49.7
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 6.4e-30 136.3 149 47.7
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.4e-30 136.0 150 50.0
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 8.4e-30 136.0 150 46.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 8.4e-30 136.0 173 45.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.4e-30 136.0 156 45.5
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.1e-29 135.6 150 48.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.4e-29 135.2 150 50.0
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.9e-29 134.8 150 49.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.2e-29 134.0 150 47.3
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.2e-29 134.0 150 47.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 3.2e-29 134.0 150 48.0
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.2e-29 133.7 150 48.7
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.2e-29 133.7 149 49.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.2e-29 133.7 149 49.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.2e-29 133.7 149 49.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 9.3e-29 132.5 150 49.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.6e-28 131.7 150 46.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.6e-28 131.7 150 46.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-28 131.3 164 48.2
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 2.1e-28 131.3 149 47.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.1e-28 131.3 150 46.0
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.5e-28 130.6 176 43.2
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 4.6e-28 130.2 150 46.7
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.0e-28 129.8 150 48.7
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 6.0e-28 129.8 150 47.3
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 6.0e-28 129.8 177 42.4
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 7.9e-28 129.4 151 45.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-27 129.0 149 49.0
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.0e-27 129.0 150 44.7
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.7e-27 128.3 150 46.7
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 3.0e-27 127.5 149 47.0
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.9e-27 127.1 134 51.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.6e-27 126.3 150 46.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 6.6e-27 126.3 150 46.0
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 6.6e-27 126.3 177 41.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.3e-26 124.0 150 46.0
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 4.3e-26 123.6 149 45.6
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 7.4e-26 122.9 150 44.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.3e-25 122.1 149 45.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.3e-25 122.1 163 43.6
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.6e-25 121.7 150 44.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.6e-25 121.7 150 42.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.6e-25 121.7 140 50.7
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.1e-25 121.3 146 46.6
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 6.2e-25 119.8 150 45.3
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 8.1e-25 119.4 146 45.9
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.3e-24 116.7 129 49.6
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.6e-23 112.8 146 44.5
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.7e-22 111.7 148 41.9
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.9e-22 110.9 149 41.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 3.8e-22 110.5 147 42.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.4e-22 109.4 128 46.1
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.9e-21 108.2 149 40.3
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.2e-20 105.5 153 37.3
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-15 89.0 145 40.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.3e-14 85.5 106 46.2
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-13 81.6 122 41.8
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.2e-13 80.9 63 60.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.1e-11 73.6 62 59.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 4.3e-10 70.5 144 33.3
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.7e-09 67.4 150 28.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 6.3e-09 66.6 75 45.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 8.2e-09 66.2 145 30.3
SGA_v2.0_scaffold97G29143 Striga asiatica HOM05D016949 ORTHO05D404913 1.4e-08 65.5 103 41.7
SGA_v2.0_scaffold77G25235 Striga asiatica HOM05D016949 ORTHO05D402576 6.9e-08 63.2 96 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.9e-06 57.8 148 28.4
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.9e-06 57.8 49 53.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.9e-06 57.8 49 53.1


User provided reference genes

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