Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.4e-139 498.8 252 100.0
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.2e-107 392.1 254 81.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.4e-91 340.1 256 71.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 5.1e-89 331.6 256 69.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.5e-88 330.1 256 69.9
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 7.4e-80 301.2 253 62.5
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 8.2e-79 297.7 257 62.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.8e-78 296.6 257 61.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.1e-78 295.8 257 61.5
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 7.7e-77 291.2 251 63.7
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-76 290.4 256 61.7
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-76 288.5 256 60.5
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.6e-74 283.5 258 59.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.6e-74 283.5 257 59.9
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.1e-74 283.1 260 58.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.7e-74 282.7 257 60.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-73 280.4 256 57.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.4e-73 280.4 257 60.3
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.8e-73 280.0 255 60.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.0e-73 279.3 257 60.3
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 9.7e-72 274.2 263 56.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 3.7e-71 272.3 252 57.9
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.7e-71 272.3 255 55.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.3e-71 271.6 257 58.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.3e-71 271.6 260 58.1
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 6.3e-71 271.6 260 58.1
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.1e-70 270.8 256 57.0
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.8e-70 270.0 252 57.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.8e-70 270.0 254 57.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.8e-70 270.0 253 59.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.4e-70 269.6 259 56.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.4e-70 269.6 259 56.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.4e-70 269.6 252 57.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.3e-70 268.5 251 55.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-69 266.5 258 57.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.4e-69 265.8 252 56.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.4e-69 265.8 260 55.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.4e-69 265.8 252 56.0
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.0e-68 264.2 254 57.5
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.0e-68 264.2 253 56.1
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.3e-68 263.8 258 57.8
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.7e-68 263.5 252 58.3
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.8e-68 262.3 255 54.9
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.8e-68 262.3 253 55.3
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 6.5e-68 261.5 252 58.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 6.5e-68 261.5 255 56.9
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 8.5e-68 261.2 254 55.1
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.5e-67 259.6 252 56.7
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.2e-67 258.8 260 54.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.4e-67 257.7 180 68.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-66 257.3 180 68.3
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-66 257.3 253 53.4
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-66 256.9 180 68.9
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.7e-66 256.1 252 54.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 4.7e-66 255.4 253 53.4
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.1e-66 255.0 252 55.2
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.9e-66 254.6 251 57.0
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.9e-66 254.6 251 57.0
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.0e-65 254.2 254 55.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-65 253.8 251 57.0
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.3e-65 253.1 190 65.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 3.0e-65 252.7 252 55.2
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.9e-65 252.3 252 54.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.1e-65 251.9 257 56.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 6.7e-65 251.5 251 56.6
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 8.8e-65 251.1 251 56.2
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.1e-64 250.8 252 54.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.5e-64 250.4 181 69.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.5e-64 250.4 172 69.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.0e-64 250.0 255 53.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.6e-64 249.6 257 55.6
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.3e-64 249.2 257 55.6
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.3e-64 249.2 257 55.6
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.4e-64 248.8 253 53.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.7e-64 248.4 181 66.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.7e-64 248.4 253 54.2
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.7e-64 248.4 181 66.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.7e-64 248.4 252 53.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 7.4e-64 248.1 250 54.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 9.7e-64 247.7 188 66.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 9.7e-64 247.7 252 56.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.3e-63 247.3 175 67.4
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-63 246.9 252 56.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.7e-63 246.9 252 55.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.7e-63 246.9 252 56.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.8e-63 246.1 175 69.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.8e-63 246.1 254 51.6
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.7e-63 245.7 252 52.8
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-62 244.2 262 51.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.1e-62 244.2 170 68.2
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.4e-62 243.8 255 52.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.8e-62 243.4 255 51.4
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.8e-62 243.4 255 51.4
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-62 243.4 178 66.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.8e-62 243.4 251 54.2
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.8e-62 243.4 264 51.5
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.4e-62 243.0 257 52.9
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.1e-62 242.7 255 52.2
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 4.1e-62 242.3 252 52.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 7.0e-62 241.5 186 65.6
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 9.1e-62 241.1 163 71.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 9.1e-62 241.1 252 53.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 9.1e-62 241.1 181 65.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.2e-61 240.7 251 54.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.5e-61 240.4 250 54.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.6e-61 239.6 255 49.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.6e-61 239.6 190 58.9
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.5e-61 238.8 238 53.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.9e-61 238.4 189 59.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.0e-60 237.7 184 63.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.3e-60 237.3 260 50.4
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.7e-60 236.9 181 63.5
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.2e-60 236.5 255 50.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 3.8e-60 235.7 255 48.2
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 8.5e-60 234.6 209 56.9
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 4.2e-59 232.3 175 64.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.1e-58 229.9 240 52.5
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.7e-58 229.6 175 62.9
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.7e-58 228.8 222 51.4
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.0e-57 226.1 237 54.0
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.9e-57 225.7 252 49.6
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 6.7e-57 224.9 257 49.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.3e-56 222.6 235 51.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-55 220.3 163 64.4
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.2e-55 218.0 151 68.9
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-53 213.8 232 53.4
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.6e-53 213.8 172 57.6
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.6e-53 213.0 172 58.7
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 4.5e-53 212.2 172 58.7
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.7e-53 211.5 147 68.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.2e-52 209.9 172 57.0
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.1e-51 207.6 158 71.5
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.9e-51 206.8 172 57.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.5e-51 205.3 203 50.2
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-50 203.8 172 55.2
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 6.1e-50 201.8 182 52.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.8e-49 200.3 233 50.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.6e-48 196.4 259 42.9
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-46 190.3 166 57.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.5e-45 186.0 159 54.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 2.9e-44 183.0 163 60.1
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.0e-42 174.9 132 59.1
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 6.3e-39 165.2 112 68.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-37 159.5 147 56.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.6e-34 149.4 106 67.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.4e-33 147.5 172 43.0
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.4e-32 142.5 171 40.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.8e-30 137.1 161 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.9e-28 129.8 174 39.7
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.8e-26 123.2 224 34.4
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.0e-21 105.5 76 63.2
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.4e-17 94.4 154 36.4
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.1e-17 93.2 88 52.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.9e-14 84.0 84 47.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.3e-12 77.8 123 43.1
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 5.8e-08 62.4 54 51.9
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 7.6e-08 62.0 53 52.8
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 3.2e-06 56.6 56 50.0


User provided reference genes

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