Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 5.4e-284 980.3 495 100.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 2.3e-165 586.3 479 61.6
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.4e-161 572.0 483 59.8
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.5e-161 571.2 495 58.8
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.1e-159 567.4 492 58.3
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 3.5e-150 535.8 494 55.3
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 3.4e-145 519.2 495 53.1
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.2e-139 500.7 486 53.5
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.6e-139 500.4 492 52.0
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.8e-139 499.6 504 53.6
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.8e-139 499.6 495 52.7
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 2.8e-139 499.6 490 52.2
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.4e-138 497.3 500 53.0
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.8e-138 496.9 476 53.8
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 2.9e-136 489.6 489 53.0
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.9e-136 489.6 489 51.7
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 1.2e-134 484.2 487 52.2
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.5e-134 482.6 486 52.9
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 3.5e-134 482.6 488 50.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 6.0e-134 481.9 494 50.6
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 7.8e-134 481.5 489 51.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-133 481.1 476 52.1
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.7e-133 480.3 489 51.3
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.3e-133 479.9 489 51.5
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.0e-133 479.6 481 50.1
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.1e-132 477.6 479 51.6
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 3.3e-132 476.1 489 50.3
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 9.6e-132 474.6 499 51.3
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.1e-131 473.4 496 49.8
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 2.4e-130 469.9 481 49.7
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 4.0e-130 469.2 487 49.7
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 9.0e-130 468.0 500 50.4
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.6e-129 466.5 482 48.1
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 4.5e-129 465.7 499 47.5
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 4.5e-129 465.7 481 49.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 4.5e-129 465.7 493 48.1
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 5.8e-129 465.3 469 52.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.4e-128 461.8 477 50.7
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.4e-127 460.7 482 47.5
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 1.4e-127 460.7 500 50.4
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.4e-127 458.8 493 46.5
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.6e-126 457.2 490 48.4
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 2.1e-126 456.8 491 49.1
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 3.5e-126 456.1 498 49.6
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.0e-125 454.5 482 47.3
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.0e-125 454.5 494 46.2
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-125 454.1 496 46.8
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.3e-125 454.1 504 47.2
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-125 453.8 496 47.0
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.3e-125 453.4 484 49.4
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.0e-125 453.0 499 47.7
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 3.0e-125 453.0 495 46.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.9e-125 452.6 499 47.5
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 3.9e-125 452.6 496 48.4
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.9e-125 452.6 486 47.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 6.7e-125 451.8 491 49.7
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.7e-125 451.8 501 48.1
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 8.7e-125 451.4 488 50.4
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.1e-124 451.1 496 46.8
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.5e-124 450.7 502 48.0
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.5e-124 449.9 486 47.1
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 3.3e-124 449.5 486 48.6
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 3.3e-124 449.5 486 48.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.3e-124 449.5 486 47.3
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 3.3e-124 449.5 498 47.6
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 5.6e-124 448.7 495 47.5
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 5.6e-124 448.7 484 49.0
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 5.6e-124 448.7 489 49.5
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 3.7e-123 446.0 491 48.1
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 6.2e-123 445.3 487 46.6
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 8.1e-123 444.9 499 45.7
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 4.0e-122 442.6 518 47.7
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-121 441.0 496 46.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 2.6e-121 439.9 485 48.5
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 3.4e-121 439.5 496 45.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.4e-121 439.5 485 47.0
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 7.6e-121 438.3 492 48.0
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.9e-121 438.0 496 46.2
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.3e-120 437.6 493 48.3
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.7e-120 437.2 491 48.1
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.7e-120 437.2 487 47.6
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 3.8e-120 436.0 489 48.5
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 6.4e-120 435.3 489 47.9
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 8.4e-120 434.9 485 48.5
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.9e-119 433.7 489 47.2
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.9e-119 433.7 491 47.5
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.9e-119 433.7 496 46.0
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.9e-119 433.7 481 46.6
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 1.6e-118 430.6 374 58.8
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 6.0e-118 428.7 488 47.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.0e-117 427.9 492 48.6
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.9e-117 426.0 490 47.3
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-116 424.5 499 47.3
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 2.5e-116 423.3 492 47.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-115 419.9 498 46.8
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.1e-114 417.9 498 44.8
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 4.5e-113 412.5 424 50.9
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.1e-111 407.9 488 46.3
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.9e-111 407.1 487 44.6
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 7.1e-111 405.2 505 46.3
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.3e-107 394.4 497 46.9
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.1e-106 391.3 472 46.4
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.1e-106 391.3 376 52.1
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.5e-105 386.0 488 45.3
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.5e-103 380.2 401 51.6
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.5e-100 370.9 384 48.4
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 2.2e-99 367.1 492 43.9
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.4e-95 354.4 521 38.4
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.4e-95 354.4 435 44.6
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.7e-91 339.7 493 39.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.4e-87 327.8 464 43.1
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.4e-87 325.1 412 45.1
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 8.0e-86 322.0 464 41.8
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 1.7e-83 314.3 291 53.3
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-82 311.2 291 53.3
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.7e-80 304.3 413 42.4
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.1e-79 301.6 489 36.2
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-79 301.6 291 52.2
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 9.4e-79 298.5 378 44.2
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 6.1e-78 295.8 329 46.5
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-75 288.1 499 39.3
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.6e-70 270.0 244 53.7
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.2e-69 266.2 246 54.9
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-68 265.0 420 36.2
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.7e-64 251.1 370 41.1
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 2.8e-62 243.8 475 32.8
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.0e-61 241.9 415 34.7
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.3e-61 240.7 474 32.9
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.2e-61 239.6 352 38.1
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.7e-60 236.1 496 32.9
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 5.0e-56 223.0 259 46.3
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 5.0e-56 223.0 475 32.2
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 6.6e-56 222.6 294 40.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.6e-54 218.0 593 29.0
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 2.8e-54 217.2 250 47.6
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.8e-54 217.2 392 33.2
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.7e-54 216.5 380 35.3
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-53 214.2 322 40.1
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 5.2e-53 213.0 186 58.6
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.4e-52 209.9 428 32.9
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-51 208.4 478 31.4
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 2.4e-50 204.1 161 60.9
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-48 198.7 186 55.4
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 5.0e-48 196.4 491 29.9
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 2.5e-47 194.1 236 43.6
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.0e-44 184.5 173 53.8
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.3e-37 161.0 296 37.2
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-37 161.0 420 28.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 2.3e-37 161.0 269 37.9
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 4.0e-37 160.2 255 40.4
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 5.2e-37 159.8 186 43.5
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.1e-34 152.1 480 27.7
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 7.8e-33 146.0 192 42.2
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-31 141.7 334 31.7
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 6.2e-30 136.3 454 27.1
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 1.9e-26 124.8 109 56.9
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.2e-25 122.1 93 64.5
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.3e-23 114.0 115 50.4
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.1e-22 109.4 99 51.5
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 5.3e-21 106.7 132 44.7
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.2e-20 105.5 121 42.1
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-20 105.1 131 44.3
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.9e-19 100.9 134 42.5
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 5.4e-18 96.7 106 44.3
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 2.7e-17 94.4 248 31.0
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-16 92.0 151 38.4
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 5.6e-15 86.7 97 44.3
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 8.4e-11 72.8 167 25.1
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 1.0e-08 65.9 78 38.5
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 4.3e-07 60.5 78 32.1
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-06 58.9 72 41.7


User provided reference genes

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