Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.7e-160 568.2 287 100.0
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 8.1e-107 391.0 317 65.0
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.9e-100 369.8 310 63.5
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.5e-84 316.2 315 58.1
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 5.6e-84 315.1 318 57.2
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 8.1e-83 311.2 304 57.2
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.8e-82 310.1 304 56.9
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 4.5e-81 305.4 298 54.4
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 3.2e-79 299.3 312 53.2
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.7e-78 296.2 312 52.9
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 2.7e-78 296.2 297 56.6
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 6.7e-77 291.6 309 54.4
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 4.3e-76 288.9 316 55.4
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 9.6e-76 287.7 265 59.6
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 2.1e-75 286.6 285 56.5
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 2.1e-75 286.6 271 57.6
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.1e-75 286.6 308 53.6
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 6.9e-74 281.6 278 55.8
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 9.0e-74 281.2 287 54.4
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.2e-73 280.8 288 54.5
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.2e-73 280.8 274 56.6
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 2.0e-73 280.0 294 53.1
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.0e-73 280.0 292 50.0
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 2.0e-73 280.0 254 60.2
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.5e-73 278.9 307 51.1
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 5.8e-73 278.5 312 52.2
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.4e-72 274.6 295 50.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.9e-71 273.5 304 52.3
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 3.2e-71 272.7 285 51.9
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 7.1e-71 271.6 293 53.2
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 7.1e-71 271.6 306 50.0
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 9.3e-71 271.2 280 53.2
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 9.3e-71 271.2 282 53.2
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.6e-70 270.4 294 51.0
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.7e-70 269.6 324 48.1
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 3.5e-70 269.2 311 51.1
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 6.0e-70 268.5 282 51.1
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 6.0e-70 268.5 260 56.5
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.9e-70 268.1 311 50.8
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.3e-69 267.3 303 49.8
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 3.0e-69 266.2 282 50.7
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 3.0e-69 266.2 282 50.7
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 6.7e-69 265.0 277 52.3
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 8.7e-69 264.6 296 49.0
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.5e-68 263.8 311 51.1
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.5e-68 263.8 287 51.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.9e-68 263.5 292 50.3
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.5e-68 263.1 319 48.3
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.5e-68 263.1 282 51.4
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 7.4e-68 261.5 294 48.6
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 7.4e-68 261.5 299 49.5
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.3e-67 260.8 309 50.2
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.3e-67 260.8 263 54.4
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.2e-67 260.0 311 48.6
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.8e-67 259.6 282 50.7
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.7e-67 259.2 267 50.6
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 6.3e-67 258.5 282 51.1
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 6.3e-67 258.5 293 49.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 1.4e-66 257.3 263 54.0
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.9e-66 255.0 305 47.2
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 3.4e-65 252.7 281 50.5
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 5.9e-65 251.9 308 49.4
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 5.9e-65 251.9 271 53.9
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 2.2e-64 250.0 275 52.0
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.2e-64 250.0 311 47.6
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.9e-64 249.6 315 47.9
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 8.5e-64 248.1 266 51.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.4e-63 247.3 310 47.7
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 3.2e-63 246.1 310 45.8
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 3.2e-63 246.1 303 47.5
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 4.2e-63 245.7 346 42.8
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.6e-62 243.8 260 50.4
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.6e-62 243.8 305 47.9
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.7e-62 243.0 327 45.3
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.3e-61 240.0 282 47.2
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 7.4e-60 235.0 342 44.7
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 9.7e-60 234.6 267 49.8
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.4e-58 230.7 249 53.0
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.3e-58 228.8 238 53.4
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 6.9e-58 228.4 282 47.9
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 9.1e-58 228.0 246 52.0
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 2.7e-54 216.5 287 44.3
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 3.6e-54 216.1 274 48.2
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 2.3e-53 213.4 307 43.3
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 7.4e-52 208.4 161 68.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 6.3e-51 205.3 247 48.2
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.1e-50 204.5 320 40.3
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.4e-50 204.1 275 42.5
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 5.9e-49 198.7 309 43.0
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 6.5e-48 195.3 265 43.8
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 1.6e-46 190.7 279 43.4
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.3e-45 186.8 405 34.8
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 6.7e-45 185.3 154 62.3
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 5.7e-44 182.2 205 48.3
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.8e-40 169.5 206 49.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.0e-40 169.1 152 58.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 5.0e-40 169.1 282 37.6
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 3.6e-38 162.9 268 39.2
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 4.0e-37 159.5 160 53.8
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 1.5e-36 157.5 215 43.7
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.2e-35 153.7 154 52.6
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.8e-35 153.3 114 71.1
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 2.4e-34 150.2 101 72.3
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 5.0e-32 142.5 150 52.7
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.9e-31 140.6 94 70.2
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.2e-31 139.8 270 36.3
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 9.4e-31 138.3 131 57.3
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.1e-30 137.1 157 50.3
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.6e-30 136.3 161 49.7
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 5.2e-29 132.5 212 40.1
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 6.8e-29 132.1 302 36.1
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 7.5e-28 128.6 87 70.1
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.8e-27 126.7 93 66.7
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 7.0e-26 122.1 83 72.3
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 3.0e-21 106.7 186 37.6
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 3.7e-19 99.8 81 63.0
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 6.3e-19 99.0 136 41.9
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 4.1e-18 96.3 183 38.8
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 3.3e-15 86.7 81 63.0
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.1e-14 84.0 149 34.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 3.1e-13 80.1 82 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.2e-11 73.9 124 37.1
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 3.2e-10 70.1 54 66.7
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 2.0e-09 67.4 60 60.0
CBR_g29426 Chara braunii HOM05D005386 ORTHO05D006981 3.0e-08 63.5 84 40.5
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-06 58.2 58 62.1
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.6e-06 57.8 89 36.0
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 2.1e-06 57.4 60 58.3
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 2.1e-06 57.4 73 49.3
C03p46250 Brassica napus HOM05D020391 ORTHO05D033527 3.6e-06 56.6 41 61.0
BolC8t50118H Brassica oleracea HOM05D020391 ORTHO05D033527 3.6e-06 56.6 41 61.0
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 6.2e-06 55.8 49 59.2
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 8.0e-06 55.5 126 30.2


User provided reference genes

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