Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 2.0e-85 318.9 150 100.0
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 4.3e-67 258.1 148 81.8
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 5.2e-65 251.1 150 78.7
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 4.4e-64 248.1 133 82.7
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.8e-64 247.7 130 85.4
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 3.2e-62 241.9 148 72.3
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 4.1e-62 241.5 150 74.0
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 5.4e-62 241.1 150 73.3
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 9.2e-62 240.4 150 74.0
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 1.2e-61 240.0 137 79.6
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 1.2e-61 240.0 129 82.2
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 1.2e-61 240.0 135 78.5
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 1.2e-61 240.0 133 78.2
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.6e-61 239.6 130 82.3
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 2.1e-61 239.2 150 74.0
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 2.7e-61 238.8 137 78.8
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 2.7e-61 238.8 150 72.7
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 2.7e-61 238.8 129 82.9
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 3.5e-61 238.4 124 83.9
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 6.0e-61 237.7 126 84.9
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 6.0e-61 237.7 151 71.5
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 6.0e-61 237.7 134 79.1
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 7.8e-61 237.3 141 76.6
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 7.8e-61 237.3 151 72.2
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 7.8e-61 237.3 151 72.2
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 1.0e-60 236.9 131 78.6
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 1.3e-60 236.5 136 78.7
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 1.3e-60 236.5 133 78.2
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 1.7e-60 236.1 133 78.9
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.7e-60 236.1 151 70.9
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.7e-60 236.1 133 79.7
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 2.3e-60 235.7 143 73.4
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 2.3e-60 235.7 135 76.3
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 3.9e-60 235.0 150 72.0
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 5.1e-60 234.6 139 75.5
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 5.1e-60 234.6 151 71.5
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.1e-60 234.6 150 72.0
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 5.1e-60 234.6 135 75.6
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 8.6e-60 233.8 120 85.8
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.5e-59 232.3 148 71.6
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 2.5e-59 232.3 135 74.8
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 3.3e-59 231.9 132 78.8
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 7.3e-59 230.7 133 75.9
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 7.3e-59 230.7 150 70.7
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 9.5e-59 230.3 133 75.9
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 9.5e-59 230.3 123 82.1
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 9.5e-59 230.3 133 76.7
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 9.5e-59 230.3 135 76.3
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 1.2e-58 229.9 128 78.9
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 1.2e-58 229.9 133 75.9
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 1.2e-58 229.9 133 75.9
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.2e-58 229.9 133 75.9
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 1.2e-58 229.9 130 76.9
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 1.6e-58 229.6 132 78.0
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.6e-58 229.6 151 69.5
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 2.1e-58 229.2 125 80.0
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 2.1e-58 229.2 132 75.8
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 2.1e-58 229.2 123 80.5
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 2.8e-58 228.8 133 76.7
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 4.7e-58 228.0 133 75.9
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 6.2e-58 227.6 132 76.5
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 6.2e-58 227.6 131 76.3
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.2e-58 227.6 160 67.5
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 6.2e-58 227.6 133 75.9
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 8.1e-58 227.3 130 76.9
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 1.1e-57 226.9 133 75.9
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.8e-57 226.1 134 75.4
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 3.1e-57 225.3 132 75.8
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 4.0e-57 224.9 134 71.6
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 5.2e-57 224.6 134 71.6
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 6.8e-57 224.2 133 75.2
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 6.8e-57 224.2 134 72.4
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 2.6e-56 222.2 133 74.4
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 3.4e-56 221.9 148 70.3
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 3.4e-56 221.9 133 72.9
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 3.4e-56 221.9 132 73.5
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 5.8e-56 221.1 130 73.1
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 5.8e-56 221.1 126 77.8
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.3e-55 219.9 126 77.8
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 1.7e-55 219.5 130 73.8
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 2.9e-55 218.8 133 72.9
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 3.8e-55 218.4 128 75.8
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 4.9e-55 218.0 135 74.1
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 6.4e-55 217.6 126 77.0
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 8.4e-55 217.2 128 75.8
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 8.4e-55 217.2 130 77.7
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 1.1e-54 216.9 125 76.8
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 1.1e-54 216.9 125 76.8
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.4e-54 215.7 142 69.7
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.4e-54 215.7 142 69.7
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 2.4e-54 215.7 130 73.1
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 5.4e-54 214.5 134 71.6
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 9.2e-54 213.8 126 74.6
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 9.2e-54 213.8 123 77.2
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 9.2e-54 213.8 150 63.3
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 9.2e-54 213.8 167 61.7
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 2.1e-53 212.6 133 75.9
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 6.0e-53 211.1 146 67.8
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 7.8e-53 210.7 128 73.4
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 7.8e-53 210.7 126 75.4
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 3.3e-51 205.3 135 67.4
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 5.6e-51 204.5 131 71.0
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 7.3e-51 204.1 132 68.9
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.6e-50 203.0 111 82.0
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 1.4e-49 199.9 138 68.1
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 3.1e-49 198.7 191 51.8
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 2.9e-47 192.2 133 64.7
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 8.4e-47 190.7 109 76.1
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 7.8e-45 184.1 168 55.4
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 8.7e-44 180.6 96 83.3
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 2.5e-43 179.1 94 85.1
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.3e-42 176.8 96 82.3
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 8.1e-42 174.1 101 78.2
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 2.0e-40 169.5 93 82.8
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 3.9e-36 155.2 96 75.0
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.1e-36 154.8 97 72.2
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 1.3e-31 140.2 93 71.0
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 3.0e-20 102.4 110 50.0
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 2.9e-15 85.9 67 61.2
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 5.0e-15 85.1 43 79.1
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.1e-09 65.5 35 88.6
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 5.3e-09 65.1 38 65.8
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 3.4e-08 62.4 38 57.9
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 1.1e-06 57.4 38 65.8
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 1.1e-06 57.4 38 65.8
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.4e-06 57.0 59 52.5
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 3.2e-06 55.8 43 58.1


User provided reference genes

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