Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.2e-161 573.2 305 100.0
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.2e-121 440.3 314 82.2
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 3.3e-106 389.0 315 71.1
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.4e-93 347.1 309 64.7
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.4e-88 330.5 304 62.8
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.3e-86 323.9 307 59.9
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 6.4e-86 321.6 303 60.7
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 9.2e-85 317.8 305 61.6
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.2e-84 317.4 307 61.2
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.6e-84 317.0 307 59.0
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 3.5e-84 315.8 316 60.4
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.3e-83 313.2 354 55.4
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 3.0e-83 312.8 318 59.4
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.1e-82 310.8 312 59.3
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 2.5e-82 309.7 304 60.2
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 2.1e-81 306.6 315 59.0
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 3.1e-80 302.8 333 56.2
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 6.9e-80 301.6 326 56.7
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 6.9e-80 301.6 319 56.4
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.4e-79 299.3 318 55.3
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 5.8e-79 298.5 311 57.9
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 5.8e-79 298.5 331 55.6
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 7.6e-79 298.1 303 57.8
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 9.9e-79 297.7 310 58.1
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.4e-77 293.9 315 55.2
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 1.9e-77 293.5 305 58.0
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 1.9e-77 293.5 311 57.2
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.9e-77 293.5 203 74.4
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 3.2e-77 292.7 308 57.5
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.2e-77 292.7 321 55.1
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 7.1e-77 291.6 315 57.5
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 9.3e-77 291.2 316 54.7
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.2e-76 290.8 316 54.7
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 6.0e-76 288.5 305 57.0
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 7.8e-76 288.1 306 56.9
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.7e-75 287.0 304 58.2
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 8.7e-75 284.6 313 56.5
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.1e-74 284.3 311 56.3
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.5e-74 283.9 328 51.8
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 3.3e-74 282.7 315 56.5
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.3e-73 280.8 309 56.3
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 8.1e-73 278.1 318 53.5
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 2.4e-72 276.6 313 53.4
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 3.1e-72 276.2 313 52.1
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 5.3e-72 275.4 311 54.0
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 6.9e-72 275.0 322 53.4
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 6.9e-72 275.0 307 55.7
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 9.0e-72 274.6 360 48.1
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.2e-71 274.2 310 55.8
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 2.6e-71 273.1 322 53.7
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.4e-71 272.7 317 54.9
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 4.5e-71 272.3 316 54.7
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 7.6e-71 271.6 305 57.0
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 9.9e-71 271.2 311 54.7
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.3e-70 270.8 322 52.5
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.7e-70 270.4 308 53.6
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 3.8e-70 269.2 321 52.6
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.1e-69 267.7 323 51.4
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.9e-69 266.9 309 54.7
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.2e-69 266.2 321 51.1
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 5.4e-69 265.4 310 52.6
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 7.1e-69 265.0 311 55.0
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 7.1e-69 265.0 311 52.4
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.6e-68 263.8 319 51.1
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 2.1e-68 263.5 319 50.2
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 2.1e-68 263.5 319 50.2
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 2.7e-68 263.1 306 52.9
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 2.7e-68 263.1 304 53.6
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 3.5e-68 262.7 189 74.6
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 4.6e-68 262.3 320 50.6
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 7.9e-68 261.5 334 50.0
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.0e-67 261.2 308 52.3
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.8e-67 260.4 314 50.6
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 3.9e-67 259.2 326 50.9
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 3.9e-67 259.2 310 52.3
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 5.1e-67 258.8 305 51.8
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 8.7e-67 258.1 326 49.4
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 5.6e-66 255.4 322 50.6
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 5.6e-66 255.4 307 50.5
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 9.6e-66 254.6 322 50.0
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 9.6e-66 254.6 322 50.0
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 9.6e-66 254.6 320 52.5
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 1.3e-65 254.2 323 51.7
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 2.1e-65 253.4 319 51.7
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 2.1e-65 253.4 334 49.4
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.1e-64 251.1 323 49.5
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 4.0e-64 249.2 255 59.2
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 1.2e-63 247.7 308 52.6
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 2.0e-63 246.9 259 56.8
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 9.9e-63 244.6 322 47.8
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.2e-62 243.4 195 67.7
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.2e-62 243.4 195 67.7
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 8.4e-62 241.5 305 52.8
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 1.4e-61 240.7 309 51.5
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 9.3e-61 238.0 314 51.3
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 1.2e-60 237.7 316 50.3
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 3.5e-60 236.1 324 48.5
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.0e-60 235.3 306 48.4
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 7.9e-60 235.0 293 51.9
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.5e-58 229.9 312 49.0
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 2.5e-58 229.9 314 47.5
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 7.4e-58 228.4 324 46.9
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 1.3e-57 227.6 310 47.7
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 1.3e-57 227.6 310 47.7
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 2.8e-57 226.5 255 54.1
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 5.3e-56 222.2 328 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.2e-54 216.9 208 58.2
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 6.5e-54 215.3 305 45.9
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 1.0e-51 208.0 168 67.3
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 3.0e-51 206.5 319 44.2
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 5.1e-51 205.7 308 46.1
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 1.9e-50 203.8 214 56.5
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 5.7e-50 202.2 322 42.5
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 1.3e-49 201.1 339 43.1
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 2.1e-49 200.3 273 46.2
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 2.8e-49 199.9 202 56.9
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.7e-46 190.7 202 54.0
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 2.1e-44 183.7 258 48.4
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 2.7e-44 183.3 335 40.6
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.0e-43 179.9 284 44.7
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 6.3e-41 172.2 196 51.0
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.2e-39 167.9 239 47.7
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 7.7e-39 165.2 245 44.1
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 1.3e-38 164.5 229 49.3
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 3.8e-38 162.9 254 43.7
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.1e-37 161.4 213 51.2
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 5.5e-37 159.1 181 53.0
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 7.2e-37 158.7 264 43.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 7.4e-34 148.7 100 75.0
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.2e-33 147.1 187 49.2
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 8.2e-33 145.2 302 39.4
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.4e-32 144.4 220 46.8
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.1e-32 142.9 220 46.4
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 5.3e-32 142.5 202 42.1
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 2.6e-31 140.2 106 68.9
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.3e-30 137.9 105 66.7
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.8e-30 136.3 268 39.6
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 3.8e-30 136.3 182 48.4
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 5.2e-27 125.9 337 34.4
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 2.4e-24 117.1 149 52.3
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 3.1e-24 116.7 101 62.4
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.5e-23 112.8 96 63.5
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 6.7e-19 99.0 82 64.6
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 8.8e-19 98.6 93 54.8
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 5.7e-18 95.9 307 33.6
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.3e-17 94.7 71 71.8
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 2.2e-14 84.0 139 43.2
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 1.2e-10 71.6 94 47.9
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 5.7e-10 69.3 53 67.9
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.2e-09 67.4 204 32.8
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 5.9e-07 59.3 142 35.2
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 7.7e-07 58.9 135 34.8


User provided reference genes

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