Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03911 Striga asiatica HOM05D003189 ORTHO05D003449 9.4e-133 476.9 242 100.0
SGA_v2.0_scaffold238G43954 Striga asiatica HOM05D003189 ORTHO05D003449 8.6e-09 65.1 105 43.8
Sabra14G0011600 Salix brachista HOM05D003189 ORTHO05D003449 1.2e-07 61.2 40 70.0
Nitab4.5_0004579g0040 Nicotiana tabacum HOM05D003189 ORTHO05D003449 2.1e-07 60.5 42 69.0
Hund13076 Selenicereus undatus HOM05D003189 ORTHO05D003449 2.1e-07 60.5 118 36.4
EL10Ac5g10532 Beta vulgaris HOM05D003189 ORTHO05D003449 2.8e-07 60.1 38 71.1
Gohir.A01G008700 Gossypium hirsutum HOM05D003189 ORTHO05D003449 3.6e-07 59.7 36 72.2
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 4.7e-07 59.3 38 65.8
Nitab4.5_0000167g0240 Nicotiana tabacum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
PSO104G0103 Papaver somniferum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
PSO421G0103 Papaver somniferum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
PSO541G0886 Papaver somniferum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
PSO675G2177 Papaver somniferum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
Peaxi162Scf00375g00615 Petunia axillaris HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
Solyc06g073430.4 Solanum lycopersicum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
Solyc11g020877.1 Solanum lycopersicum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
PGSC0003DMG400009264 Solanum tuberosum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
PGSC0003DMG401027007 Solanum tuberosum HOM05D003189 ORTHO05D003449 4.7e-07 59.3 36 72.2
Ah.11g050410 Amaranthus hybridus HOM05D003189 ORTHO05D003449 6.1e-07 58.9 42 64.3
CSS0032484 Camellia sinensis var. sinensis HOM05D003189 ORTHO05D003449 6.1e-07 58.9 37 67.6
Gorai.008G020800 Gossypium raimondii HOM05D003189 ORTHO05D003449 6.1e-07 58.9 37 70.3
EL10Ac6g14358 Beta vulgaris HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
AUR62028592 Chenopodium quinoa HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
AUR62028593 Chenopodium quinoa HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
AUR62032319 Chenopodium quinoa HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
AUR62032320 Chenopodium quinoa HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
AUR62037313 Chenopodium quinoa HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
COL.COLO4_32536 Corchorus olitorius HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Duzib052G0899 Durio zibethinus HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Duzib132G0055 Durio zibethinus HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Duzib248G0306 Durio zibethinus HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.A03G183800 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.A04G118700 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.A13G045800 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.D01G008400 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.D02G205300 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.D04G160400 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gohir.D13G044900 Gossypium hirsutum HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gorai.002G010100 Gossypium raimondii HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gorai.005G232700 Gossypium raimondii HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gorai.012G148100 Gossypium raimondii HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Gorai.013G049700 Gossypium raimondii HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Lj5g0014458 Lotus japonicus HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Potri.004G043600 Populus trichocarpa HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 69.4
Hund02837 Selenicereus undatus HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Thecc.02G114800 Theobroma cacao HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
TAR376G0465 Trochodendron aralioides HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
TAR628G1357 Trochodendron aralioides HOM05D003189 ORTHO05D003449 8.0e-07 58.5 36 72.2
Atru.chr13.812 Acer truncatum HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
Hma1.2p1_0775F.1_g216420 Hydrangea macrophylla HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
Oeu021368.1 Olea europaea HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
PSO017G1086 Papaver somniferum HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 66.7
Potri.001G295902 Populus trichocarpa HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
Potri.002G119600 Populus trichocarpa HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
Potri.009G090000 Populus trichocarpa HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
Potri.014G017701 Populus trichocarpa HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
SalBow1G7312 Salvia bowleyana HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
SalBow6G1867 Salvia bowleyana HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
Sed0013704 Sechium edule HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
unitig_0.g883 Utricularia gibba HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
unitig_699.g19269 Utricularia gibba HOM05D003189 ORTHO05D003449 1.4e-06 57.8 36 69.4
GSVIVG01015056001 Vitis vinifera HOM05D003189 ORTHO05D003449 1.4e-06 57.8 37 64.9
Migut.B00428 Erythranthe guttata HOM05D003189 ORTHO05D003449 1.8e-06 57.4 38 63.2
FAN27G2501 Fragaria x ananassa HOM05D003189 ORTHO05D003449 1.8e-06 57.4 35 68.6
Lj1g0015146 Lotus japonicus HOM05D003189 ORTHO05D003449 1.8e-06 57.4 36 72.2
Os03g0773150 Oryza sativa ssp. japonica HOM05D003189 ORTHO05D003449 1.8e-06 57.4 36 69.4
Os11g0634500 Oryza sativa ssp. japonica HOM05D003189 ORTHO05D003449 1.8e-06 57.4 36 69.4
Os12g0508300 Oryza sativa ssp. japonica HOM05D003189 ORTHO05D003449 1.8e-06 57.4 36 69.4
Atru.chr5.1718 Acer truncatum HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 69.4
Atru.chr5.2383 Acer truncatum HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 69.4
arahy.Tifrunner.gnm1.ann1.LDJ367 Arachis hypogaea HOM05D003189 ORTHO05D003449 2.3e-06 57.0 62 46.8
arahy.Tifrunner.gnm1.ann1.MB08BW Arachis hypogaea HOM05D003189 ORTHO05D003449 2.3e-06 57.0 62 46.8
CSS0000989 Camellia sinensis var. sinensis HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
CSS0013259 Camellia sinensis var. sinensis HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
CSS0026517 Camellia sinensis var. sinensis HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
CANSAT11G0948 Cannabis sativa HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
CANSAT25G0551 Cannabis sativa HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Cfa004642 Carpinus fangiana HOM05D003189 ORTHO05D003449 2.3e-06 57.0 34 70.6
Ca_11043_v3 Cicer arietinum L. HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Ca_24353_v3 Cicer arietinum L. HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Haze_10241 Corylus avellana HOM05D003189 ORTHO05D003449 2.3e-06 57.0 34 70.6
MELO3C017993.2 Cucumis melo HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
MELO3C018512.2 Cucumis melo HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
CsaV3_4G000420 Cucumis sativus L. HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
CsaV3_7G007910 Cucumis sativus L. HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Dinv25547 Davidia involucrata HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
FAN15G0513 Fragaria x ananassa HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
FAN20G1877 Fragaria x ananassa HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
FAN24G2580 Fragaria x ananassa HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
FAN27G0067 Fragaria x ananassa HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Glyma.01G242902 Glycine max HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Glyma.10G258502 Glycine max HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Glyma.11G001432 Glycine max HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Glyma.20G132651 Glycine max HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
MD05G1097200 Malus domestica HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
MD10G1103200 Malus domestica HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Manes.05G180600 Manihot esculenta HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Manes.18G044866 Manihot esculenta HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Manes.18G044932 Manihot esculenta HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Phvul.002G052200 Phaseolus vulgaris HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Phvul.007G043800 Phaseolus vulgaris HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Prupe.8G141900 Prunus persica HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
RcHm_v2.0_Chr6g0309341 Rosa chinensis HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Sed0004983 Sechium edule HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Sed0021591 Sechium edule HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
Sed0024485 Sechium edule HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 66.7
TWI14G0300 Tripterygium wilfordii HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 69.4
TWI56G0031 Tripterygium wilfordii HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 69.4
TWI59G1001 Tripterygium wilfordii HOM05D003189 ORTHO05D003449 2.3e-06 57.0 36 69.4
SalBow8G2279 Salvia bowleyana HOM05D003189 ORTHO05D003449 3.0e-06 56.6 36 66.7
CiPaw.05G016200 Carya illinoinensis HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
CiPaw.06G166800 Carya illinoinensis HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
CiPaw.07G176700 Carya illinoinensis HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
Haze_22315 Corylus avellana HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
Eucgr.F02264 Eucalyptus grandis HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
MBI16_g18402_MAGBIO Magnolia biondii HOM05D003189 ORTHO05D003449 4.0e-06 56.2 45 53.3
Manes.10G080500 Manihot esculenta HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
PGR042G3446 Punica granatum HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
PGR083G2481 Punica granatum HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
PGR120G0013 Punica granatum HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
PGR142G3793 Punica granatum HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
RcHm_v2.0_Chr6g0253421 Rosa chinensis HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 63.9
HPP92_010591 Vanilla planifolia HOM05D003189 ORTHO05D003449 4.0e-06 56.2 36 66.7
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 5.2e-06 55.8 34 67.6
Migut.J00914 Erythranthe guttata HOM05D003189 ORTHO05D003449 5.2e-06 55.8 36 63.9
Migut.L01573 Erythranthe guttata HOM05D003189 ORTHO05D003449 5.2e-06 55.8 36 63.9
MBI16_g05031_MAGBIO Magnolia biondii HOM05D003189 ORTHO05D003449 5.2e-06 55.8 36 66.7
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 6.8e-06 55.5 33 69.7
Lalb_Chr02g0145081 Lupinus albus HOM05D003189 ORTHO05D003449 6.8e-06 55.5 36 66.7
Lalb_Chr06g0165241 Lupinus albus HOM05D003189 ORTHO05D003449 6.8e-06 55.5 36 66.7
Lalb_Chr21g0308141 Lupinus albus HOM05D003189 ORTHO05D003449 6.8e-06 55.5 36 66.7
MD15G1072100 Malus domestica HOM05D003189 ORTHO05D003449 6.8e-06 55.5 37 62.2
SalBow7G4819 Salvia bowleyana HOM05D003189 ORTHO05D003449 6.8e-06 55.5 36 66.7
C03p68740 Brassica napus HOM05D003189 ORTHO05D003449 8.9e-06 55.1 57 52.6
PSO832G4572 Papaver somniferum HOM05D003189 ORTHO05D003449 8.9e-06 55.1 45 64.4


User provided reference genes

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