Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.5e-77 292.7 142 100.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 4.2e-24 115.2 64 84.4
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 5.5e-24 114.8 64 84.4
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.6e-23 113.2 95 63.2
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 6.1e-23 111.3 73 75.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 8.0e-23 110.9 64 81.2
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.0e-22 110.5 91 58.2
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.8e-22 109.8 64 79.7
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 3.0e-22 109.0 64 79.7
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 3.0e-22 109.0 64 79.7
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.0e-22 109.0 64 79.7
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 3.0e-22 109.0 71 74.6
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 4.0e-22 108.6 64 79.7
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 5.2e-22 108.2 64 79.7
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 5.2e-22 108.2 64 79.7
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 5.2e-22 108.2 64 79.7
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 5.2e-22 108.2 64 79.7
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 5.2e-22 108.2 64 79.7
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 5.2e-22 108.2 76 67.1
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 6.8e-22 107.8 64 78.1
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.8e-22 107.8 60 83.3
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 6.8e-22 107.8 60 83.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.8e-22 107.8 60 83.3
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.8e-22 107.8 60 83.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 6.8e-22 107.8 89 61.8
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 6.8e-22 107.8 60 83.3
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 8.8e-22 107.5 71 70.4
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 8.8e-22 107.5 64 78.1
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 8.8e-22 107.5 60 83.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 8.8e-22 107.5 64 78.1
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 8.8e-22 107.5 64 78.1
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.8e-22 107.5 64 78.1
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 8.8e-22 107.5 64 78.1
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.8e-22 107.5 64 79.7
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.2e-21 107.1 60 81.7
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.2e-21 107.1 64 78.1
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.2e-21 107.1 64 76.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.2e-21 107.1 79 64.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.2e-21 107.1 64 78.1
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 1.2e-21 107.1 64 78.1
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.2e-21 107.1 64 78.1
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.2e-21 107.1 65 76.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.5e-21 106.7 64 78.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.5e-21 106.7 64 76.6
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.5e-21 106.7 60 81.7
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.5e-21 106.7 64 78.1
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.0e-21 106.3 85 60.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.0e-21 106.3 64 76.6
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.0e-21 106.3 64 78.1
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.0e-21 106.3 64 78.1
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.0e-21 106.3 64 76.6
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 2.0e-21 106.3 64 76.6
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.6e-21 105.9 64 76.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.6e-21 105.9 64 76.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.6e-21 105.9 64 76.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.6e-21 105.9 64 78.1
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.6e-21 105.9 60 80.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.6e-21 105.9 64 78.1
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 76.6
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 75.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 76.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.4e-21 105.5 61 80.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 78.1
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 78.1
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 78.1
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 76.6
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 78.1
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 76.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 76.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 78.1
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 3.4e-21 105.5 64 78.1
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.4e-21 105.1 64 76.6
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 4.4e-21 105.1 64 76.6
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 4.4e-21 105.1 64 75.0
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.4e-21 105.1 64 73.4
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 4.4e-21 105.1 64 78.1
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 5.7e-21 104.8 60 80.0
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 5.7e-21 104.8 64 76.6
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 5.7e-21 104.8 64 76.6
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 5.7e-21 104.8 64 76.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.5e-21 104.4 64 75.0
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.5e-21 104.4 64 75.0
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 7.5e-21 104.4 64 78.1
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 9.8e-21 104.0 64 75.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 9.8e-21 104.0 64 75.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 9.8e-21 104.0 64 75.0
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.3e-20 103.6 64 76.6
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.3e-20 103.6 64 76.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.3e-20 103.6 64 75.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.7e-20 103.2 64 76.6
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.8e-20 102.4 64 75.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.8e-20 102.4 64 75.0
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 2.8e-20 102.4 64 75.0
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.8e-20 102.4 64 73.4
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.7e-20 102.1 64 75.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 4.8e-20 101.7 64 75.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.3e-20 100.9 64 73.4
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.1e-19 100.5 64 73.4
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.1e-19 100.5 64 73.4
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.1e-19 100.5 64 73.4
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.8e-19 99.8 60 75.0
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.8e-19 99.8 60 75.0
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.4e-19 99.4 64 73.4
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.4e-19 99.4 64 73.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.4e-19 99.4 64 71.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 2.4e-19 99.4 60 75.0
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 2.4e-19 99.4 60 75.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 2.4e-19 99.4 60 75.0
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.4e-19 99.4 60 75.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.4e-19 99.4 60 75.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.1e-19 99.0 92 53.3
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 3.1e-19 99.0 64 71.9
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.1e-19 99.0 64 70.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 9.1e-19 97.4 67 70.1
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.0e-18 96.3 79 57.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.2e-16 88.6 60 71.7
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 5.0e-09 65.1 55 61.8


User provided reference genes

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