Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 2.8e-79 298.5 145 100.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 6.9e-22 107.8 68 76.5
SGA_v2.0_scaffold157G37396 Striga asiatica HOM05D002086 ORTHO05D004968 4.5e-21 105.1 55 94.5
SGA_v2.0_scaffold147G36327 Striga asiatica HOM05D004041 ORTHO05D004564 1.4e-19 100.1 55 87.3
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 9.3e-19 97.4 65 69.2
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 2.7e-18 95.9 55 85.5
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.7e-15 85.5 67 61.2
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 4.8e-15 85.1 67 61.2
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.1e-14 84.0 67 59.7
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.1e-14 84.0 67 59.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.4e-14 83.6 67 59.7
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.1e-14 82.4 67 59.7
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.1e-14 82.4 67 59.7
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.1e-14 82.0 67 62.7
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.1e-14 82.0 67 59.7
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.2e-13 80.5 67 58.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-13 80.5 67 56.7
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-13 80.5 67 56.7
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.0e-13 79.7 67 61.2
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 2.6e-13 79.3 67 61.2
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.6e-13 79.3 67 56.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 3.4e-13 79.0 68 60.3
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 3.4e-13 79.0 68 58.8
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 4.5e-13 78.6 68 55.9
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 4.5e-13 78.6 68 55.9
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.5e-13 78.6 67 56.7
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 5.9e-13 78.2 67 58.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.0e-12 77.4 67 53.7
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.3e-12 77.0 67 56.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.3e-12 77.0 68 57.4
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.3e-12 77.0 68 57.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.3e-12 77.0 67 58.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.7e-12 76.6 67 52.2
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.2e-12 76.3 69 55.1
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.9e-12 75.9 67 58.2
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 3.8e-12 75.5 67 56.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 5.0e-12 75.1 67 52.2
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 6.5e-12 74.7 67 53.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 6.5e-12 74.7 67 53.7
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 8.5e-12 74.3 67 55.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 8.5e-12 74.3 67 56.7
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 8.5e-12 74.3 67 55.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.1e-11 73.9 67 55.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.1e-11 73.9 68 51.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.4e-11 73.6 67 52.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.4e-11 73.6 67 53.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.4e-11 73.6 67 52.2
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.9e-11 73.2 68 55.9
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.9e-11 73.2 67 55.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.9e-11 73.2 68 55.9
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.5e-11 72.8 67 53.7
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.5e-11 72.8 68 57.4
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.2e-11 72.4 67 52.2
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.2e-11 72.4 67 56.7
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.2e-11 72.4 67 56.7
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 3.2e-11 72.4 67 53.7
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.2e-11 72.4 67 55.2
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.2e-11 72.0 67 52.2
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 4.2e-11 72.0 67 55.2
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.5e-11 71.6 67 52.2
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 5.5e-11 71.6 68 52.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 5.5e-11 71.6 67 52.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 5.5e-11 71.6 67 50.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 7.2e-11 71.2 68 52.9
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 7.2e-11 71.2 68 52.9
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 7.2e-11 71.2 68 52.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.2e-11 71.2 68 55.9
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.2e-11 71.2 68 55.9
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 7.2e-11 71.2 67 55.2
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 7.2e-11 71.2 67 55.2
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 7.2e-11 71.2 67 52.2
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 7.2e-11 71.2 67 55.2
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.4e-11 70.9 68 52.9
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 9.4e-11 70.9 68 52.9
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.4e-11 70.9 67 53.7
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.4e-11 70.9 68 54.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 9.4e-11 70.9 68 52.9
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 9.4e-11 70.9 68 50.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.2e-10 70.5 67 49.3
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.2e-10 70.5 68 51.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.2e-10 70.5 68 54.4
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.2e-10 70.5 67 50.7
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.6e-10 70.1 67 50.7
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.1e-10 69.7 67 49.3
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.1e-10 69.7 67 52.2
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.1e-10 69.7 67 50.7
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.7e-10 69.3 67 53.7
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-10 69.3 67 53.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 3.6e-10 68.9 67 47.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.6e-10 68.9 68 52.9
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.6e-10 68.9 67 55.2
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.6e-10 68.9 68 52.9
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.6e-10 68.9 68 52.9
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.6e-10 68.9 67 52.2
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.6e-10 68.6 68 51.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 4.6e-10 68.6 68 52.9
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 6.1e-10 68.2 68 50.0
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 6.1e-10 68.2 68 51.5
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.1e-10 68.2 68 54.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 6.1e-10 68.2 67 49.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 7.9e-10 67.8 68 50.0
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 7.9e-10 67.8 67 47.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 7.9e-10 67.8 67 49.3
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.4e-09 67.0 68 54.4
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.8e-09 66.6 67 49.3
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-09 66.6 67 49.3
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-09 66.6 67 49.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-09 66.6 67 49.3
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-09 66.6 67 49.3
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.3e-09 66.2 67 52.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.3e-09 66.2 68 52.9
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 3.0e-09 65.9 67 46.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.9e-09 65.5 68 55.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.9e-09 65.5 67 50.7
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 6.7e-09 64.7 67 47.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 6.7e-09 64.7 67 53.7
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 8.8e-09 64.3 67 47.8
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.1e-08 63.9 55 54.5
SGA_v2.0_scaffold86G26849 Striga asiatica HOM05D003631 ORTHO05D004564 1.5e-08 63.5 49 61.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 2.5e-08 62.8 67 50.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.5e-08 62.8 67 49.3
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.4e-08 61.2 67 49.3
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 7.4e-08 61.2 67 50.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.8e-07 59.3 67 43.3
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.8e-07 59.3 67 52.2
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.8e-07 59.3 67 52.2
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.4e-06 57.0 71 46.5
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.4e-06 57.0 72 45.8
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.4e-06 57.0 72 43.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.8e-06 56.6 72 44.4
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.4e-06 56.2 71 46.5
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.4e-06 56.2 71 46.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 3.1e-06 55.8 74 44.6
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 5.3e-06 55.1 74 43.2


User provided reference genes

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