Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.3e-60 235.3 116 100.0
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.3e-55 219.5 116 92.2
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 7.1e-54 213.8 112 91.1
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.2e-53 213.0 116 89.7
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 1.9e-51 205.7 115 86.1
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.3e-51 204.9 111 87.4
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 5.7e-51 204.1 111 87.4
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 7.4e-51 203.8 111 87.4
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 7.4e-51 203.8 111 87.4
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-50 203.0 111 86.5
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-50 203.0 111 86.5
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.6e-50 202.6 111 86.5
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 2.8e-50 201.8 111 86.5
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.7e-50 201.4 111 85.6
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 6.3e-50 200.7 116 84.5
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-49 199.9 111 86.5
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.4e-49 198.7 116 81.0
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 3.1e-49 198.4 116 83.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 6.9e-49 197.2 113 81.4
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 3.4e-48 194.9 111 82.9
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.3e-47 193.0 113 80.5
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.9e-47 191.8 111 81.1
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 5.0e-47 191.0 116 77.6
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 8.5e-47 190.3 111 79.3
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.1e-46 189.9 111 79.3
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.4e-46 189.5 115 77.4
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 1.9e-46 189.1 111 78.4
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 79.3
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 3.2e-46 188.3 111 77.5
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 3.2e-46 188.3 111 78.4
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 4.2e-46 188.0 114 78.1
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.2e-46 188.0 111 77.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 5.5e-46 187.6 111 78.4
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 7.2e-46 187.2 116 77.6
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 7.2e-46 187.2 111 79.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 9.4e-46 186.8 111 76.6
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 9.4e-46 186.8 115 74.8
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.2e-45 186.4 111 76.6
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.2e-45 186.4 111 76.6
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 79.3
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 77.5
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.6e-45 186.0 110 78.2
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.6e-45 186.0 110 80.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.7e-45 185.3 115 73.9
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 4.6e-45 184.5 111 76.6
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 4.6e-45 184.5 116 75.9
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 6.1e-45 184.1 111 76.6
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.0e-44 183.3 111 76.6
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.4e-44 183.0 111 74.8
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.4e-44 183.0 111 76.6
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.4e-44 183.0 111 74.8
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.8e-44 182.6 114 74.6
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.3e-44 182.2 111 74.8
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 3.0e-44 181.8 115 73.9
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 3.0e-44 181.8 111 75.7
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 5.1e-44 181.0 109 77.1
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 5.1e-44 181.0 111 77.5
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 6.7e-44 180.6 111 73.0
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 8.8e-44 180.3 111 73.9
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 74.8
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.9
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.9
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 74.8
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 75.7
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 74.8
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 74.8
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 76.6
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.5e-43 178.7 111 74.8
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.5e-43 178.7 116 72.4
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.3e-43 178.3 111 74.8
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.3e-43 178.3 111 73.0
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 3.3e-43 178.3 116 74.1
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 3.3e-43 178.3 111 74.8
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 5.7e-43 177.6 111 73.9
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.9
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 9.7e-43 176.8 111 73.9
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.9
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.0
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 72.1
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 4.8e-42 174.5 111 73.0
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 4.8e-42 174.5 111 73.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 6.3e-42 174.1 111 71.2
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.4e-41 172.2 114 71.1
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 4.1e-41 171.4 116 69.8
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 6.9e-41 170.6 111 72.1
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.4e-40 168.3 126 63.5
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.0e-39 166.8 111 69.4
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.3e-39 166.4 132 61.4
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.3e-39 166.4 135 61.5
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 5.0e-39 164.5 111 66.7
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.1e-38 163.3 111 68.5
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 71.2
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 2.5e-38 162.2 113 69.0
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 4.2e-38 161.4 108 68.5
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 9.4e-38 160.2 108 68.5
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.1e-37 159.1 102 70.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.0e-36 156.8 103 71.8
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 1.4e-36 156.4 101 72.3
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.3e-36 155.6 114 63.2
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-35 152.9 103 70.9
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.0e-35 152.5 107 68.2
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.7e-34 149.4 110 65.5
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 4.8e-34 147.9 114 64.0
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.0e-31 140.2 81 74.1
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.7e-31 139.4 86 73.3
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.9e-30 136.0 134 53.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.2e-29 133.3 109 58.7
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.6e-29 132.9 81 71.6
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 8.0e-29 130.6 100 66.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.0e-28 130.2 109 56.9
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.4e-28 129.8 74 83.8
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.3e-28 129.0 174 44.3
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 3.9e-28 128.3 88 68.2
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 5.7e-27 124.4 108 52.8
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-25 119.4 75 74.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-25 119.4 75 74.7
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.9e-24 114.4 67 74.6
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-22 110.2 71 70.4
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 1.1e-22 110.2 69 73.9
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 3.2e-22 108.6 72 66.7
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 8.0e-21 104.0 110 49.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 6.8e-20 100.9 69 68.1
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.2e-19 100.1 82 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 4.4e-19 98.2 135 37.8
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.2e-18 95.9 54 77.8
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.1e-17 93.6 61 72.1
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.4e-17 93.2 54 75.9
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 7.0e-17 90.9 54 79.6
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 3.6e-13 78.6 56 64.3
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.7e-10 69.7 48 68.8
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 8.3e-10 67.4 60 53.3
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.8e-09 66.2 58 56.9
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 8.6e-07 57.4 38 68.4


User provided reference genes

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