Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 7.5e-312 1073.2 545 100.0
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.5e-242 842.8 514 82.5
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.4e-237 825.5 524 79.6
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 7.1e-237 823.9 514 80.2
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.7e-235 819.3 514 79.2
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-234 816.2 514 79.0
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.8e-233 811.2 526 78.5
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.6e-231 805.4 524 79.0
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.5e-231 804.7 527 77.8
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 9.9e-231 803.5 521 77.4
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.7e-230 802.7 515 76.7
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.2e-230 802.4 523 77.6
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.9e-230 802.0 525 77.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 6.4e-230 800.8 522 76.8
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.4e-229 799.7 523 76.5
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.2e-228 796.6 528 77.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.3e-227 792.3 515 76.3
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.9e-227 791.6 519 75.1
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.9e-227 791.6 519 76.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.4e-224 783.1 519 76.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.4e-224 782.3 520 77.1
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.0e-224 781.6 537 73.4
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 5.8e-223 777.7 516 75.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 6.4e-222 774.2 530 74.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 6.4e-222 774.2 532 74.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.1e-221 773.5 526 73.2
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.4e-221 773.1 522 75.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-221 773.1 515 74.0
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 7.1e-221 770.8 518 74.5
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 7.1e-221 770.8 528 74.2
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.7e-220 768.8 529 73.9
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.7e-220 768.8 540 72.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 4.6e-220 768.1 530 74.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.0e-219 766.9 519 75.1
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.3e-219 766.5 525 73.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.8e-219 766.1 534 73.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.8e-219 766.1 526 73.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.0e-219 765.4 529 73.7
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 3.0e-219 765.4 531 72.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.9e-219 765.0 518 74.5
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 5.1e-219 764.6 531 73.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.1e-218 763.5 515 75.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.1e-218 763.5 514 74.7
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.9e-218 762.7 519 74.8
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.5e-218 762.3 526 73.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.3e-218 761.9 540 72.2
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 4.3e-218 761.5 531 72.9
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 7.4e-218 760.8 531 72.9
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 7.4e-218 760.8 531 72.9
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 7.4e-218 760.8 531 72.9
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 7.4e-218 760.8 531 72.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.6e-218 760.4 514 74.9
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-217 759.6 531 73.1
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.1e-217 759.2 527 72.3
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.8e-217 758.8 531 72.3
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 3.7e-217 758.4 520 73.7
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 3.7e-217 758.4 530 73.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 3.7e-217 758.4 527 72.5
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 4.8e-217 758.1 520 73.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 4.8e-217 758.1 520 73.7
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 6.2e-217 757.7 520 74.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 3.1e-216 755.4 528 72.2
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 3.1e-216 755.4 516 72.7
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.0e-216 755.0 516 72.3
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 5.3e-216 754.6 527 71.5
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 5.3e-216 754.6 520 74.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 9.0e-216 753.8 520 73.8
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.2e-215 753.4 527 73.1
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.5e-215 753.1 519 71.9
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 3.4e-215 751.9 454 82.8
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 5.8e-215 751.1 516 73.3
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.8e-214 748.4 452 81.4
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.9e-214 748.0 516 71.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.9e-214 748.0 515 71.8
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.4e-214 747.3 516 71.3
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.1e-213 746.9 474 79.3
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.1e-213 746.9 513 73.9
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-213 746.5 519 72.4
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 7.1e-213 744.2 514 72.0
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.2e-212 743.4 519 71.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.0e-211 738.8 519 71.1
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.1e-210 736.9 513 73.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.1e-208 730.3 469 78.5
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 2.4e-208 729.2 498 72.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 5.3e-208 728.0 516 71.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.5e-207 726.5 469 78.0
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.6e-207 725.7 521 70.6
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.0e-203 713.8 525 67.0
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-203 713.4 523 69.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.8e-203 713.0 513 69.2
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 5.1e-203 711.4 452 74.8
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.5e-202 709.9 438 80.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.7e-201 705.3 511 68.5
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 4.8e-201 704.9 518 67.2
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.2e-201 704.1 516 68.6
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-200 703.4 511 68.5
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-200 702.6 516 68.4
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 6.9e-200 701.0 511 68.3
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 9.1e-200 700.7 521 68.9
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.0e-199 699.5 425 81.4
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.2e-198 696.0 514 66.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.8e-198 695.3 511 67.9
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 8.5e-198 694.1 516 66.3
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.6e-196 689.9 523 65.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.0e-195 687.2 527 64.7
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 8.8e-195 684.1 525 67.8
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.1e-194 683.7 517 65.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.7e-191 671.0 526 63.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.2e-189 665.6 453 71.1
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.0e-188 661.0 459 74.5
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.5e-181 638.3 520 61.0
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 7.5e-178 627.9 516 62.2
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.2e-177 626.3 531 59.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.7e-177 625.5 527 60.0
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.7e-169 600.1 381 77.4
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-167 593.6 517 58.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.3e-166 589.7 377 77.7
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.4e-160 569.7 455 61.8
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.1e-160 568.9 378 75.1
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 7.5e-154 548.1 391 68.8
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 4.9e-153 545.4 528 56.2
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.3e-150 537.3 310 85.5
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.8e-147 526.9 375 68.8
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 9.5e-141 504.6 348 73.0
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-139 500.7 351 70.7
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.1e-131 473.0 464 49.4
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.9e-126 456.1 315 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 8.7e-126 454.9 532 46.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 9.6e-125 451.4 455 49.2
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.1e-117 427.9 553 42.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.7e-105 387.5 533 39.0
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.2e-96 356.3 251 72.9
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.7e-95 353.6 216 80.6
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 4.8e-76 289.7 194 74.7
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.5e-66 256.9 192 68.2
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.8e-60 236.5 160 73.8
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 7.0e-59 232.6 175 66.9
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.4e-51 207.6 184 56.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.0e-49 202.2 138 73.9
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.1e-48 198.7 150 69.3
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 3.6e-47 193.7 154 64.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 4.0e-46 190.3 159 59.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 3.1e-38 164.1 134 63.4
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.0e-33 147.5 97 73.2
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 8.0e-31 139.4 150 52.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 7.1e-27 126.3 142 50.7
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 6.2e-23 113.2 76 75.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.4e-21 107.5 516 24.6
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 8.3e-20 102.8 71 71.8
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 2.7e-18 97.8 463 24.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.3e-12 79.0 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.3e-12 79.0 67 55.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.3e-08 63.9 74 44.6
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.3e-07 62.4 46 58.7
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.1e-06 57.8 46 54.3


User provided reference genes

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