Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 0.0e+00 1835.1 913 100.0
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 0.0e+00 1196.4 891 67.2
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 2.5e-311 1072.0 919 60.9
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.0e-300 1035.8 917 59.5
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 5.8e-276 954.5 921 54.3
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 6.2e-270 934.5 928 53.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.6e-265 919.8 922 52.8
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 2.4e-261 906.0 926 53.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.9e-258 896.3 944 50.2
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.3e-256 889.4 897 51.1
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 3.3e-255 885.6 909 52.8
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 7.7e-252 874.4 960 50.8
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 8.5e-251 870.9 920 49.2
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.4e-250 870.2 922 51.5
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 5.5e-250 868.2 931 51.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.8e-248 863.2 905 50.8
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 5.1e-248 861.7 886 52.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 7.4e-247 857.8 901 49.9
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.4e-245 853.6 917 49.6
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 6.9e-245 851.3 917 49.4
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.4e-244 849.0 917 49.4
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 7.7e-244 847.8 914 48.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.4e-242 843.6 925 50.2
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 5.5e-242 841.6 919 50.5
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 2.1e-241 839.7 918 49.1
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.1e-241 839.7 917 49.0
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 6.1e-241 838.2 936 49.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 8.0e-241 837.8 922 49.3
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 4.4e-239 832.0 927 48.5
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 4.4e-239 832.0 923 48.8
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.7e-238 830.1 929 48.4
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 2.8e-238 829.3 923 48.9
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 2.8e-238 829.3 918 48.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 4.8e-238 828.6 931 49.2
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.4e-237 827.0 934 48.8
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 2.4e-237 826.2 926 48.9
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 6.5e-235 818.1 911 48.5
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 8.5e-235 817.8 921 47.1
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.9e-234 816.6 917 48.2
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.5e-234 816.2 916 48.5
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.2e-234 815.8 910 48.4
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.2e-233 813.9 802 52.5
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.7e-233 812.8 911 48.3
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 3.6e-233 812.4 921 49.5
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.4e-232 810.4 884 49.7
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.8e-232 810.1 913 48.2
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.8e-232 810.1 921 48.5
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.2e-232 808.5 924 50.0
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 5.2e-232 808.5 924 48.4
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 2.6e-231 806.2 902 48.3
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.3e-230 803.9 922 48.5
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 4.8e-230 802.0 929 47.0
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 8.2e-230 801.2 928 46.8
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 2.4e-229 799.7 874 50.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 3.1e-229 799.3 886 49.3
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 4.5e-228 795.4 926 47.5
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.3e-227 793.9 931 49.1
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.2e-226 789.3 922 46.6
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 2.7e-225 786.2 936 47.5
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 6.8e-224 781.6 988 44.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 4.4e-223 778.9 937 45.9
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 6.5e-219 765.0 911 47.0
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-217 760.4 944 45.7
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.4e-216 757.3 935 45.3
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.2e-214 750.0 933 46.2
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 5.4e-213 745.3 920 46.8
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 7.0e-213 745.0 919 47.0
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.0e-212 743.4 904 45.8
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 8.0e-209 731.5 708 53.1
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.4e-208 730.7 897 46.2
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 2.3e-208 729.9 897 46.0
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.5e-207 724.9 905 44.9
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.3e-206 724.2 906 45.7
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.2e-205 719.5 885 46.4
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 5.4e-205 718.8 903 45.5
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.0e-203 712.2 897 44.9
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 4.3e-202 709.1 1025 42.3
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.7e-198 697.2 911 43.9
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.4e-197 693.3 905 44.4
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 8.6e-195 684.9 912 43.0
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.1e-192 677.9 1166 37.6
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 6.8e-192 675.2 668 51.8
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 4.1e-189 666.0 755 48.3
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 4.6e-188 662.5 725 48.8
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 6.6e-187 658.7 932 41.8
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.1e-185 653.7 911 42.6
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 4.4e-183 646.0 643 54.4
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.4e-183 646.0 696 49.0
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 9.9e-183 644.8 681 49.9
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 9.9e-183 644.8 898 41.6
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 2.7e-180 636.7 900 39.9
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.2e-166 590.5 550 54.9
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 4.9e-166 589.3 495 58.8
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 3.2e-165 586.6 907 40.0
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.9e-163 579.7 879 41.1
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.6e-162 575.9 747 43.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.4e-160 570.5 663 47.7
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.8e-147 527.7 925 36.9
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.3e-145 521.5 465 56.6
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.2e-141 506.9 446 55.6
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.5e-133 480.7 956 32.4
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 9.1e-128 462.2 411 56.4
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 5.3e-120 436.4 522 46.0
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.9e-117 427.9 913 34.2
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.8e-104 384.8 936 30.3
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 3.0e-99 367.5 469 41.8
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 5.4e-96 356.7 469 44.3
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-95 355.1 492 42.3
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 8.0e-92 342.8 222 70.7
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 8.0e-92 342.8 222 70.7
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-89 335.5 268 60.1
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 6.4e-89 333.2 863 29.8
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 8.3e-89 332.8 487 43.3
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 7.8e-87 326.2 295 54.2
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.8e-83 315.1 265 57.0
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.6e-82 311.2 397 45.1
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 9.2e-80 302.8 487 41.7
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.5e-77 294.7 477 40.5
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 4.4e-74 283.9 280 53.6
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.4e-74 283.9 298 49.0
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.1e-72 279.3 531 33.7
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.9e-65 254.6 485 37.5
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-64 251.9 317 45.7
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.2e-64 250.8 424 39.6
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 6.6e-62 243.4 399 36.3
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-59 235.3 424 34.9
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-56 226.1 245 50.6
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 7.1e-56 223.4 511 30.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 7.8e-55 219.9 558 28.0
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.1e-54 217.2 166 61.4
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 1.1e-51 209.5 403 36.5
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 7.6e-50 203.4 354 34.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 8.4e-49 199.9 553 28.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 8.7e-46 189.9 221 45.7
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.1e-39 168.7 137 54.0
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.9e-37 162.2 177 46.9
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.0e-33 149.8 246 39.4
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.5e-29 135.2 108 58.3
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.5e-25 120.6 157 45.2
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.5e-25 120.6 157 45.2
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.5e-21 109.4 78 70.5
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-21 109.0 90 53.3
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 3.3e-21 108.2 188 37.8
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 5.7e-21 107.5 670 22.1
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-18 99.4 170 37.6
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 4.5e-18 97.8 170 37.1
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.0e-17 96.7 201 33.3
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-17 96.3 159 40.3
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-15 89.7 80 51.2
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-15 87.8 136 39.7
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 5.1e-14 84.3 72 59.7
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.8e-12 77.8 75 45.3
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 2.6e-10 72.0 132 34.1
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.7e-09 69.3 209 32.5
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.9e-09 68.6 54 57.4
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.8e-06 59.3 141 30.5


User provided reference genes

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