Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.8e-231 805.1 444 100.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 9.9e-120 434.5 373 71.0
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 5.6e-107 392.1 401 60.3
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 3.4e-104 382.9 368 63.3
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 4.2e-102 375.9 374 61.2
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.1e-97 359.8 396 57.6
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.7e-90 336.3 390 57.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.6e-88 330.1 388 55.7
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.2e-87 327.0 387 55.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.8e-87 326.2 378 56.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.9e-86 323.9 388 55.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.2e-86 322.8 390 56.7
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-85 320.5 343 58.9
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 7.9e-85 318.5 266 73.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-82 311.2 393 54.7
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.3e-82 311.2 374 54.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 6.2e-82 308.9 322 60.2
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.4e-81 307.0 352 56.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.2e-80 304.7 394 54.6
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 2.6e-80 303.5 338 58.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.0e-79 301.6 393 53.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.7e-79 300.8 397 53.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 2.2e-79 300.4 376 52.9
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.5e-79 298.9 377 50.9
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.5e-78 295.8 389 51.9
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.7e-77 293.5 391 51.4
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 6.1e-77 292.4 394 51.3
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.3e-76 291.2 378 52.1
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.8e-76 290.8 362 53.0
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.8e-76 290.8 390 54.4
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 6.7e-76 288.9 388 51.0
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.1e-75 288.1 390 53.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-75 288.1 415 49.2
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 4.3e-75 286.2 412 50.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.3e-75 286.2 391 50.9
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.7e-75 285.8 397 50.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.3e-74 284.6 389 51.2
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 3.7e-74 283.1 395 51.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 3.7e-74 283.1 403 50.6
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.3e-74 282.3 390 50.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.4e-73 281.2 376 50.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.8e-73 280.8 373 50.9
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.8e-73 280.8 393 49.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.5e-72 277.7 345 53.3
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 4.5e-72 276.2 398 49.0
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.8e-71 273.1 388 50.8
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 5.0e-71 272.7 395 49.4
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.4e-70 271.2 365 49.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.5e-70 270.4 388 50.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.2e-70 270.0 390 49.7
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.2e-70 269.6 315 54.6
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 9.4e-70 268.5 394 48.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.2e-69 268.1 379 50.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.7e-69 266.9 383 48.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 7.9e-69 265.4 382 49.0
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.9e-69 265.4 390 49.2
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.4e-68 264.6 367 51.8
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.8e-68 264.2 389 49.1
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.1e-65 253.1 347 50.4
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 4.1e-65 253.1 395 48.6
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 6.9e-65 252.3 344 52.9
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.9e-65 252.3 385 50.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.0e-64 250.8 409 46.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-64 250.4 331 52.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.6e-64 250.4 372 49.7
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 3.4e-64 250.0 392 48.5
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.7e-63 247.7 349 50.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.2e-63 247.3 393 48.9
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.8e-63 246.5 332 50.3
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 3.8e-63 246.5 348 50.3
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.0e-63 246.1 347 49.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 6.5e-63 245.7 398 48.0
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 6.5e-63 245.7 402 45.8
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.1e-62 245.0 380 48.4
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.4e-62 244.6 334 50.6
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.4e-62 244.6 368 51.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.5e-62 243.8 331 53.2
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 7.2e-62 242.3 405 46.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.2e-61 241.5 377 47.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.6e-61 241.1 347 49.0
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.1e-61 240.7 338 49.1
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.1e-61 240.7 377 45.9
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.7e-61 240.4 347 49.0
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.7e-61 240.4 311 54.0
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.4e-60 238.0 389 47.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.8e-60 237.7 389 45.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.3e-60 237.3 307 49.8
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.0e-60 236.9 375 46.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.6e-59 233.8 362 47.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 9.7e-59 231.9 286 52.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.3e-58 231.5 394 47.0
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 8.2e-58 228.8 385 47.8
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.5e-56 224.6 379 48.5
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.0e-56 224.2 387 45.2
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.6e-56 223.8 351 50.1
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 8.0e-53 212.2 289 52.9
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.4e-52 211.5 379 45.4
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 4.0e-52 209.9 341 45.5
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 6.7e-52 209.1 355 44.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 6.7e-52 209.1 355 44.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 8.8e-52 208.8 376 43.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.1e-51 208.4 365 43.8
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.1e-51 208.4 365 43.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.1e-51 208.4 270 50.4
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.3e-51 206.8 376 43.9
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 4.4e-51 206.5 389 40.4
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.3e-50 204.9 366 44.5
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.2e-50 204.1 355 44.8
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.7e-50 203.4 371 41.8
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 6.3e-50 202.6 376 43.1
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.4e-49 201.4 392 40.3
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 4.1e-49 199.9 218 57.3
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.5e-48 196.8 367 43.1
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.9e-47 193.7 375 41.9
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 5.0e-47 193.0 382 40.6
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.4e-46 188.7 374 39.6
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 6.1e-45 186.0 317 43.8
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 5.2e-44 183.0 257 49.8
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.3e-42 178.3 166 63.3
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.4e-41 174.9 178 60.1
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-41 174.9 279 44.8
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-41 174.9 279 44.8
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.9e-39 167.2 118 75.4
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.1e-38 165.2 378 40.5
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 9.4e-38 162.2 295 41.7
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.1e-33 148.7 335 36.4
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.4e-33 148.3 327 38.8
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.8e-33 147.9 365 35.9
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 3.0e-28 130.6 185 50.3
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 4.0e-28 130.2 220 44.5
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 6.8e-28 129.4 107 67.3
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.9e-24 116.3 336 36.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-23 114.4 152 52.6
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-23 114.4 152 52.6
Migut.M01429 Erythranthe guttata HOM05D002882 ORTHO05D003127 2.5e-22 110.9 74 81.1
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.3e-22 109.4 119 56.3
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-21 107.5 159 47.8
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.4e-19 100.5 199 42.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.2e-18 97.8 221 38.9
SalBow8G3098 Salvia bowleyana HOM05D002882 ORTHO05D003127 1.0e-15 89.0 67 73.1
Oeu047048.1 Olea europaea HOM05D002882 ORTHO05D003127 6.6e-15 86.3 65 69.2
CAN.G696.9 Capsicum annuum HOM05D002882 ORTHO05D003127 7.3e-14 82.8 67 67.2
Solyc04g014840.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 9.5e-14 82.4 65 64.6
Sopen04g006970 Solanum pennellii HOM05D002882 ORTHO05D003127 9.5e-14 82.4 65 64.6
Solyc11g012600.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 1.2e-13 82.0 64 70.3
Sopen11g007330 Solanum pennellii HOM05D002882 ORTHO05D003127 1.2e-13 82.0 64 70.3
PGSC0003DMG400013293 Solanum tuberosum HOM05D002232 ORTHO05D002323 3.6e-13 80.5 67 65.7
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 8.9e-12 75.9 57 73.7
unitig_37.g12182 Utricularia gibba HOM05D004683 ORTHO05D005388 1.1e-09 68.9 110 44.5
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-09 67.0 155 36.8
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-09 67.0 155 36.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-09 67.0 155 36.8
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.4e-09 66.6 155 36.8
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-08 65.1 155 36.1
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-08 65.1 155 36.1
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.1e-08 64.7 107 47.7
HanXRQChr01g0004761 Helianthus annuus HOM05D002882 ORTHO05D003127 1.0e-07 62.4 61 55.7
Potri.016G008600 Populus trichocarpa HOM05D002882 ORTHO05D003127 2.3e-07 61.2 66 54.5
DCAR_030855 Daucus carota HOM05D002882 ORTHO05D003127 8.6e-07 59.3 62 45.2
CiPaw.09G105800 Carya illinoinensis HOM05D002882 ORTHO05D003127 1.5e-06 58.5 67 46.3
QL05p068309 Quercus lobata HOM05D002882 ORTHO05D003127 1.9e-06 58.2 67 49.3
Potri.006G017100 Populus trichocarpa HOM05D002882 ORTHO05D003127 2.5e-06 57.8 67 47.8
Dinv04408 Davidia involucrata HOM05D002882 ORTHO05D003127 4.3e-06 57.0 67 44.8
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.3e-06 57.0 163 34.4
PSO541G3989 Papaver somniferum HOM05D002882 ORTHO05D003127 4.3e-06 57.0 67 46.3
PSO675G6750 Papaver somniferum HOM05D002882 ORTHO05D003127 4.3e-06 57.0 67 46.3
vmacro03624 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 5.6e-06 56.6 64 50.0
vmacro23180 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 5.6e-06 56.6 64 50.0
CANSAT56G1012 Cannabis sativa HOM05D002882 ORTHO05D003127 7.3e-06 56.2 67 46.3
ECA246G4694 Erigeron canadensis HOM05D002882 ORTHO05D003127 9.5e-06 55.8 67 44.8
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 9.5e-06 55.8 66 48.5
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 9.5e-06 55.8 242 28.9


User provided reference genes

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