Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03591 Striga asiatica HOM05D006026 ORTHO05D007502 1.0e-102 376.7 191 100.0
Migut.B00021 Erythranthe guttata HOM05D006026 ORTHO05D007502 1.7e-12 77.0 105 49.5
Cc09_g10590 Coffea canephora HOM05D006026 ORTHO05D007502 2.9e-12 76.3 113 46.9
Nitab4.5_0000783g0230 Nicotiana tabacum HOM05D006026 ORTHO05D007502 2.9e-12 76.3 105 48.6
Nitab4.5_0009888g0010 Nicotiana tabacum HOM05D006026 ORTHO05D007502 2.9e-12 76.3 105 48.6
PGR042G3337 Punica granatum HOM05D006026 ORTHO05D007502 3.8e-12 75.9 105 47.6
Glyma.06G001032 Glycine max HOM05D006026 ORTHO05D007502 5.0e-12 75.5 104 49.0
vmacro02320 Vaccinium macrocarpon HOM05D006026 ORTHO05D007502 5.0e-12 75.5 105 48.6
CAN.G1235.18 Capsicum annuum HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
COL.COLO4_17947 Corchorus olitorius HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
Solyc01g112060.4 Solanum lycopersicum HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
Sopen01g054110 Solanum pennellii HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
PGSC0003DMG400018657 Solanum tuberosum HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
SGA_v2.0_scaffold32G13334 Striga asiatica HOM05D006026 ORTHO05D007502 6.5e-12 75.1 105 47.6
Aqoxy6G01749 Aquilegia oxysepala HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 46.7
AUR62012942 Chenopodium quinoa HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 48.6
AUR62027142 Chenopodium quinoa HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 48.6
AUR62029494 Chenopodium quinoa HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 48.6
ClCG00G000750 Citrullus lanatus HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 47.6
ClCG00G001730 Citrullus lanatus HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 47.6
DCAR_015673 Daucus carota HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 49.5
Hma1.2p1_0271F.1_g109040 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 47.6
Hma1.2p1_0271F.1_g109050 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 47.6
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 8.5e-12 74.7 105 47.6
EL10Ac9g21273 Beta vulgaris HOM05D006026 ORTHO05D007502 1.1e-11 74.3 105 47.6
Eucgr.G01834 Eucalyptus grandis HOM05D006026 ORTHO05D007502 1.1e-11 74.3 105 47.6
Rhsim11G0196300 Rhododendron simsii HOM05D006026 ORTHO05D007502 1.1e-11 74.3 105 48.6
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 1.5e-11 73.9 105 47.6
CSS0017921 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 1.5e-11 73.9 105 47.6
Gohir.A03G209000 Gossypium hirsutum HOM05D006026 ORTHO05D007502 1.5e-11 73.9 105 46.7
HanXRQChr02g0049421 Helianthus annuus HOM05D006026 ORTHO05D007502 1.5e-11 73.9 105 47.6
Potri.004G183100 Populus trichocarpa HOM05D006026 ORTHO05D007502 1.5e-11 73.9 105 47.6
Actinidia18011 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.9e-11 73.6 105 47.6
Actinidia20559 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.9e-11 73.6 105 47.6
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 1.9e-11 73.6 105 46.7
MELO3C013632.2 Cucumis melo HOM05D006026 ORTHO05D007502 1.9e-11 73.6 105 46.7
CsaV3_6G012790 Cucumis sativus L. HOM05D006026 ORTHO05D007502 1.9e-11 73.6 105 46.7
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 1.9e-11 73.6 105 46.7
CANSAT25G3515 Cannabis sativa HOM05D006026 ORTHO05D007502 2.5e-11 73.2 105 47.6
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 2.5e-11 73.2 138 42.0
HPP92_025949 Vanilla planifolia HOM05D006026 ORTHO05D007502 2.5e-11 73.2 105 49.5
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 3.2e-11 72.8 105 46.7
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 3.2e-11 72.8 105 47.6
Lalb_Chr08g0246801 Lupinus albus HOM05D006026 ORTHO05D007502 3.2e-11 72.8 137 40.9
Phvul.009G116200 Phaseolus vulgaris HOM05D006026 ORTHO05D007502 3.2e-11 72.8 105 46.7
Cfa005337 Carpinus fangiana HOM05D006026 ORTHO05D007502 4.2e-11 72.4 105 47.6
Medtr3g118430 Medicago truncatula HOM05D006026 ORTHO05D007502 4.2e-11 72.4 105 46.7
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 4.2e-11 72.4 106 46.2
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 4.2e-11 72.4 105 45.7
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 4.2e-11 72.4 105 45.7
AUR62027145 Chenopodium quinoa HOM05D006026 ORTHO05D007502 5.5e-11 72.0 89 51.7
Manes.04G065300 Manihot esculenta HOM05D006026 ORTHO05D007502 5.5e-11 72.0 105 45.7
Potri.009G143000 Populus trichocarpa HOM05D006026 ORTHO05D007502 5.5e-11 72.0 105 47.6
THA.LOC104807393 Tarenaya hassleriana HOM05D006026 ORTHO05D007502 5.5e-11 72.0 105 46.7
TPR.G38515 Trifolium pratense HOM05D006026 ORTHO05D007502 5.5e-11 72.0 105 46.7
Atru.chr5.3501 Acer truncatum HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 46.7
ATR0661G296 Amborella trichopoda HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 46.7
arahy.Tifrunner.gnm1.ann1.C9RI5X Arachis hypogaea HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 45.7
arahy.Tifrunner.gnm1.ann1.NGL2PI Arachis hypogaea HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 45.7
ECA233G5240 Erigeron canadensis HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 46.7
Thhalv10025389m.g Eutrema salsugineum HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 45.7
Lsat_1_v5_gn_8_120201 Lactuca sativa HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 46.7
Sabra09G0110800 Salix brachista HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 45.7
Sed0018198 Sechium edule HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 45.7
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 45.7
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 7.2e-11 71.6 105 46.7
AL7G15930 Arabidopsis lyrata HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 48.6
AT4G35250 Arabidopsis thaliana HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 45.7
BcaB03g11776 Brassica carinata HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 47.6
BcaC01g00829 Brassica carinata HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 47.6
A08p16240 Brassica napus HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 47.6
BraA08t33594Z Brassica rapa HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 47.6
Carub.0007s0505 Capsella rubella HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 45.7
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 45.7
CiPaw.05G090000 Carya illinoinensis HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 45.7
FvH4_2g16360 Fragaria vesca HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 44.8
FAN15G0892 Fragaria x ananassa HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 44.8
FAN24G0545 Fragaria x ananassa HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 44.8
FAN24G2355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 44.8
FAN27G0355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 44.8
Psat5g000600 Pisum sativum HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 45.7
RcHm_v2.0_Chr6g0280111 Rosa chinensis HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 44.8
Sp7g33020 Schrenkiella parvula HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 45.7
Sc14g0002380 Simmondsia chinensis HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 46.7
unitig_748.g7335 Utricularia gibba HOM05D006026 ORTHO05D007502 9.4e-11 71.2 105 46.7
Aa31LG2G14780 Aethionema arabicum HOM05D006026 ORTHO05D007502 1.2e-10 70.9 105 47.6
CARHR243570 Cardamine hirsuta HOM05D006026 ORTHO05D007502 1.2e-10 70.9 105 47.6
Gorai.005G258300 Gossypium raimondii HOM05D006026 ORTHO05D007502 1.2e-10 70.9 105 46.7
Os08g0553800 Oryza sativa ssp. japonica HOM05D006026 ORTHO05D007502 1.2e-10 70.9 105 46.7
GSVIVG01023933001 Vitis vinifera HOM05D006026 ORTHO05D007502 1.2e-10 70.9 105 46.7
C03p84930 Brassica napus HOM05D006026 ORTHO05D007502 1.6e-10 70.5 105 45.7
BolC3t20785H Brassica oleracea HOM05D006026 ORTHO05D007502 1.6e-10 70.5 105 45.7
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 1.6e-10 70.5 105 45.7
Sabra04G0123100 Salix brachista HOM05D006026 ORTHO05D007502 1.6e-10 70.5 105 47.6
Hund06172 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.6e-10 70.5 105 45.7
Mapoly0013s0111 Marchantia polymorpha HOM05D006026 ORTHO05D007502 2.1e-10 70.1 105 46.7
Zm00001eb039850 Zea mays HOM05D006026 ORTHO05D007502 2.7e-10 69.7 105 46.7
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 3.6e-10 69.3 105 44.8
CDE05G3682 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 3.6e-10 69.3 105 44.8
Gohir.D02G230700 Gossypium hirsutum HOM05D006026 ORTHO05D007502 3.6e-10 69.3 105 45.7
Prupe.8G176300 Prunus persica HOM05D006026 ORTHO05D007502 3.6e-10 69.3 105 44.8
TWI79G1086 Tripterygium wilfordii HOM05D006026 ORTHO05D007502 3.6e-10 69.3 105 44.8
MD05G1131800 Malus domestica HOM05D006026 ORTHO05D007502 4.7e-10 68.9 105 43.8
Ciclev10028591m.g Citrus clementina HOM05D006026 ORTHO05D007502 8.0e-10 68.2 105 44.8
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 1.4e-09 67.4 105 43.8
QL11p054672 Quercus lobata HOM05D006026 ORTHO05D007502 1.4e-09 67.4 105 44.8
Haze_02040 Corylus avellana HOM05D006026 ORTHO05D007502 1.8e-09 67.0 82 53.7
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 1.2e-08 64.3 106 44.3
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 2.0e-08 63.5 105 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 3.4e-08 62.8 105 44.8
QL11p054687 Quercus lobata HOM05D006026 ORTHO05D007502 4.4e-08 62.4 105 42.9
SGA_v2.0_scaffold13G06633 Striga asiatica HOM05D006026 ORTHO05D007502 4.8e-07 58.9 35 82.9


User provided reference genes

Program Settings