Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 0.0e+00 2162.5 1063 100.0
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 0.0e+00 1410.6 1002 71.3
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 0.0e+00 1181.4 987 62.1
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1097.0 1007 55.8
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 7.3e-312 1073.9 1014 54.1
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.6e-291 1005.7 1001 51.0
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 3.5e-288 995.3 1007 52.2
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 4.5e-288 995.0 995 52.3
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 1.4e-284 983.4 1010 52.4
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.4e-284 983.4 967 53.4
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 1.2e-283 980.3 1000 50.6
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.2e-280 970.3 953 53.5
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.1e-277 959.5 1010 49.6
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 6.1e-277 958.0 988 51.0
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 8.3e-274 947.6 1016 49.2
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 9.2e-273 944.1 997 48.9
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.0e-271 939.1 971 51.7
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.7e-266 923.3 1012 47.9
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.9e-265 919.8 1033 48.1
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 3.4e-259 899.0 972 49.2
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.2e-258 896.3 990 48.6
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.9e-257 893.3 1018 47.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 5.1e-255 885.2 1033 46.3
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 4.0e-252 875.5 1000 47.1
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 2.4e-249 866.3 1011 46.0
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 4.1e-249 865.5 997 46.0
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 4.6e-248 862.1 1011 46.0
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.8e-245 852.8 1011 46.1
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 4.2e-241 839.0 1008 45.5
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 9.3e-241 837.8 1002 45.0
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 6.6e-239 831.6 1022 46.1
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.1e-236 824.3 1023 44.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 3.2e-233 812.8 1007 43.7
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 5.4e-233 812.0 1029 44.0
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 7.1e-233 811.6 1004 44.3
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.2e-232 810.8 987 43.5
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 1.7e-231 807.0 1004 44.0
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 2.3e-231 806.6 1006 45.2
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 6.6e-231 805.1 959 45.9
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 5.3e-228 795.4 997 43.6
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 2.0e-227 793.5 994 43.6
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 2.6e-227 793.1 1005 43.6
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 9.9e-227 791.2 1012 43.6
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 1.7e-226 790.4 1008 43.8
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 6.4e-226 788.5 1000 43.8
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.3e-223 780.8 1006 42.6
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 3.0e-223 779.6 1000 43.3
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 3.9e-223 779.2 1006 42.2
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 3.9e-223 779.2 1130 41.5
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.1e-222 777.7 999 41.3
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.3e-221 774.2 1002 43.1
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 2.8e-221 773.1 1003 41.2
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 4.8e-221 772.3 997 41.1
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 9.0e-220 768.1 1008 41.8
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.6e-219 766.5 1004 40.7
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 4.5e-219 765.8 997 41.2
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.3e-218 764.2 995 40.7
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 1.3e-218 764.2 997 40.8
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 8.4e-218 761.5 999 41.3
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.4e-217 760.8 997 40.8
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.3e-217 758.1 922 44.7
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.2e-216 757.7 968 43.6
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.3e-215 754.2 1018 42.6
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 1.4e-212 744.2 1012 42.7
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.2e-211 741.1 1006 42.0
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 3.6e-208 729.6 832 44.8
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 6.1e-200 702.2 923 42.3
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 2.2e-194 683.7 746 47.6
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.7e-191 672.2 922 41.5
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 4.8e-189 666.0 896 41.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 2.9e-186 656.8 997 37.1
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 3.5e-179 633.3 824 43.1
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 3.2e-177 626.7 737 43.6
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 3.6e-176 623.2 999 35.8
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.6e-176 623.2 1005 37.6
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.7e-176 622.9 829 43.5
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 3.1e-172 610.1 847 41.4
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 7.0e-172 609.0 1001 34.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.2e-168 598.2 1068 37.0
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.1e-164 585.1 755 41.5
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 5.4e-164 582.8 561 53.7
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 7.3e-161 572.4 846 39.4
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.3e-154 551.6 1006 35.1
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 9.8e-150 535.4 714 40.8
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 3.7e-149 533.5 709 40.3
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 2.3e-143 514.2 1031 34.2
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.1e-137 495.4 802 38.5
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.0e-134 484.6 585 45.3
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 6.9e-119 433.0 999 32.8
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 2.4e-116 424.5 438 49.1
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.6e-115 421.8 752 35.2
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 3.2e-108 397.5 892 31.8
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 7.9e-107 392.9 413 48.2
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.0e-82 312.8 503 39.6
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 4.5e-78 297.4 988 26.7
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 3.2e-76 291.2 1062 26.5
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.6e-70 272.3 365 41.4
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 9.1e-63 246.5 429 37.3
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.2e-62 246.1 247 53.0
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.2e-59 236.1 184 57.1
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.0e-58 231.1 515 33.2
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.8e-56 224.2 298 36.9
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.4e-55 222.6 231 51.9
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 2.0e-54 218.8 236 47.5
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.6e-51 209.1 185 52.4
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.8e-50 205.7 430 33.0
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 6.1e-43 180.6 233 40.3
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.8e-42 177.2 174 48.9
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 5.8e-41 174.1 129 61.2
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.3e-36 157.9 192 45.3
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 6.8e-34 150.6 132 50.8
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 2.6e-33 148.7 148 47.3
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.9e-32 144.4 133 53.4
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 1.1e-23 116.7 116 49.1
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 7.8e-22 110.5 147 42.2
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.0e-21 108.6 147 41.5
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 8.6e-21 107.1 93 55.9
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 6.2e-19 100.9 258 28.7
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 3.1e-18 98.6 154 34.4
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.5e-17 96.3 94 48.9
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 6.6e-13 80.9 86 40.7
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 3.1e-10 72.0 154 33.1
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-09 69.7 74 50.0
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 4.9e-08 64.7 154 27.3
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 4.6e-06 58.2 66 45.5
CBR_g36330 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-06 58.2 92 37.0
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 6.0e-06 57.8 126 34.9


User provided reference genes

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