Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03549 Striga asiatica HOM05D003079 ORTHO05D003461 1.1e-194 683.3 388 100.0
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 6.6e-104 381.7 441 59.6
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.5e-47 194.5 407 43.0
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 5.9e-44 182.6 310 45.2
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 1.3e-43 181.4 307 44.3
MSTRG.14525 Avicennia marina HOM05D003079 ORTHO05D003461 6.1e-41 172.6 263 52.5
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 5.2e-40 169.5 361 39.1
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.8e-40 169.1 363 37.7
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 8.3e-38 162.2 343 38.8
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.0e-35 152.9 375 34.9
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 6.5e-35 152.5 285 41.1
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 1.5e-34 151.4 353 41.9
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 4.7e-33 146.4 419 31.7
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 1.4e-32 144.8 353 34.6
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.8e-32 142.5 401 33.4
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.4e-31 139.8 388 35.6
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 5.7e-31 139.4 351 33.6
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 7.5e-31 139.0 349 35.5
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.7e-30 137.9 404 34.7
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 9.1e-29 132.1 372 34.1
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 2.0e-28 131.0 384 32.3
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.0e-28 131.0 364 33.0
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.7e-27 127.9 374 32.6
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 2.3e-27 127.5 424 30.0
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 1.5e-26 124.8 291 36.4
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 4.2e-26 123.2 300 34.0
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 5.5e-26 122.9 335 32.5
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 9.5e-26 122.1 366 32.5
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 1.4e-24 118.2 348 33.0
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 5.2e-24 116.3 393 31.3
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 5.2e-24 116.3 393 31.3
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 2.6e-23 114.0 300 37.7
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 5.7e-23 112.8 370 35.4
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 7.5e-23 112.5 369 31.2
Oeu006261.2 Olea europaea HOM05D003079 ORTHO05D003461 1.7e-22 111.3 308 32.5
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 4.9e-22 109.8 368 30.2
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 6.3e-22 109.4 451 28.6
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 6.3e-22 109.4 355 31.0
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.1e-21 108.6 356 30.1
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 1.2e-20 105.1 418 30.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 1.6e-20 104.8 378 28.0
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.5e-20 103.6 368 31.0
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.5e-20 103.6 367 30.2
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 4.6e-20 103.2 347 31.7
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 5.9e-20 102.8 353 30.0
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.9e-20 102.8 354 30.2
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.9e-20 102.8 354 30.8
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 2.3e-19 100.9 369 28.2
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 8.6e-19 99.0 369 30.9
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.3e-18 97.1 366 28.7
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 4.3e-18 96.7 401 34.4
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 7.3e-18 95.9 400 27.5
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 3.6e-17 93.6 399 29.8
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 2.3e-16 90.9 361 26.9
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 2.3e-16 90.9 346 30.9
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 3.1e-16 90.5 393 28.8
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 4.0e-16 90.1 371 31.0
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 5.2e-16 89.7 352 29.0
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.2e-16 89.7 462 27.7
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 6.8e-16 89.4 462 27.7
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 1.5e-15 88.2 108 47.2
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.5e-15 88.2 373 29.8
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 1.5e-15 88.2 410 28.8
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 2.0e-15 87.8 242 30.2
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 2.6e-15 87.4 392 28.1
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 4.4e-15 86.7 317 27.8
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 9.8e-15 85.5 462 26.2
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 2.9e-14 84.0 368 29.3
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 8.3e-14 82.4 349 28.1
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 8.3e-14 82.4 370 27.3
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 8.3e-14 82.4 368 28.8
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 1.1e-13 82.0 386 27.5
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.1e-13 82.0 386 27.5
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.4e-13 81.6 350 28.3
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 1.9e-13 81.3 459 26.6
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.9e-13 81.3 399 25.3
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 3.2e-13 80.5 363 27.5
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 3.2e-13 80.5 315 27.6
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 4.1e-13 80.1 459 27.5
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.2e-12 78.6 400 25.2
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 2.0e-12 77.8 340 30.3
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 2.0e-12 77.8 356 28.9
Actinidia03676 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.5e-12 77.0 111 45.0
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.6e-12 76.6 382 26.7
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 6.0e-12 76.3 407 27.5
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.7e-11 74.7 382 26.4
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.7e-11 74.7 382 26.4
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.7e-11 74.7 365 25.2
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 1.7e-11 74.7 346 26.0
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 1.7e-11 74.7 432 27.1
unitig_21.g20258 Utricularia gibba HOM05D003079 ORTHO05D003461 2.3e-11 74.3 284 33.8
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.0e-11 73.9 111 43.2
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 3.9e-11 73.6 397 26.7
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 6.6e-11 72.8 111 42.3
ATR0751G103 Amborella trichopoda HOM05D003079 ORTHO05D003461 1.5e-10 71.6 111 39.6
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 2.5e-10 70.9 362 28.2
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 4.3e-10 70.1 372 26.9
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 1.2e-09 68.6 109 39.4
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.2e-09 68.6 376 25.8
PGSC0003DMG400029886 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.1e-09 67.8 71 52.1
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 3.6e-09 67.0 365 27.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 3.6e-09 67.0 440 25.9
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 4.7e-09 66.6 73 46.6
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 1.1e-08 65.5 408 26.5
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.8e-08 64.7 421 29.0
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 2.3e-08 64.3 222 32.4
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 4.0e-08 63.5 367 27.8
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 4.0e-08 63.5 382 24.1
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 8.9e-08 62.4 364 27.7
Os08g0497900 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 8.9e-08 62.4 234 26.9
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.2e-07 62.0 119 43.7
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.2e-07 62.0 368 27.4
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 2.0e-07 61.2 293 27.3
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 2.0e-07 61.2 352 31.0
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 2.6e-07 60.8 326 27.9
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 2.6e-07 60.8 427 23.4
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.4e-07 60.1 365 26.0
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.4e-07 60.1 357 24.6
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 5.8e-07 59.7 458 25.1
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 7.5e-07 59.3 326 27.9
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 7.5e-07 59.3 323 27.9
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 1.3e-06 58.5 119 43.7
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.2e-06 57.8 405 26.2
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 2.2e-06 57.8 405 25.2
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 3.7e-06 57.0 320 28.8
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 4.9e-06 56.6 262 25.2
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 8.3e-06 55.8 366 24.9
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.3e-06 55.8 368 26.9
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 8.3e-06 55.8 368 26.9


User provided reference genes

Program Settings