Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 3.4e-217 758.1 393 100.0
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 3.3e-87 326.2 248 71.8
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.0e-83 314.7 253 66.4
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 3.2e-82 309.7 225 69.8
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 7.2e-82 308.5 238 68.9
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.2e-81 307.8 235 69.4
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.6e-81 307.4 244 63.9
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.1e-81 307.0 223 69.5
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 3.6e-81 306.2 238 68.9
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 3.6e-81 306.2 223 68.6
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 4.7e-81 305.8 232 68.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.7e-81 305.8 232 68.5
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 8.0e-81 305.1 232 68.1
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.4e-80 304.3 238 68.5
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.3e-80 303.5 216 69.9
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 3.0e-80 303.1 231 68.4
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 6.8e-80 302.0 236 66.5
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 8.8e-80 301.6 235 67.2
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.2e-79 301.2 235 68.1
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.2e-79 301.2 235 68.1
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 1.5e-79 300.8 211 70.6
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 3.4e-79 299.7 251 62.9
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 7.5e-79 298.5 176 78.4
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 7.5e-79 298.5 237 65.0
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 7.5e-79 298.5 232 68.5
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 2.2e-78 297.0 231 67.5
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 2.8e-78 296.6 213 70.0
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.8e-78 295.8 238 66.0
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 4.8e-78 295.8 185 76.2
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.3e-78 295.4 232 67.7
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 6.3e-78 295.4 244 62.7
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 6.3e-78 295.4 231 65.8
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 8.3e-78 295.0 238 65.5
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.4e-77 294.3 236 64.8
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.4e-77 294.3 233 66.5
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.8e-77 293.9 233 65.2
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.4e-77 293.5 238 65.1
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 3.1e-77 293.1 235 66.0
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.2e-76 291.2 234 65.4
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.2e-76 291.2 235 66.0
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.6e-76 290.8 192 74.0
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-76 290.8 243 63.4
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.0e-76 290.4 242 62.8
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 4.5e-76 289.3 229 65.1
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 5.9e-76 288.9 240 64.2
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 7.7e-76 288.5 183 74.3
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 7.7e-76 288.5 223 65.0
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.0e-75 288.1 220 66.8
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.0e-75 288.1 246 62.6
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-75 287.0 195 70.8
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.9e-75 286.6 175 77.7
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.9e-75 286.6 238 65.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 3.8e-75 286.2 232 64.7
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 5.0e-75 285.8 230 65.7
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 6.5e-75 285.4 239 62.8
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 6.5e-75 285.4 232 64.7
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 8.6e-75 285.0 234 64.5
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.1e-74 284.6 237 63.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.1e-74 284.6 218 66.1
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.5e-74 284.3 237 63.3
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.5e-74 284.3 176 76.7
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.5e-74 283.5 237 63.7
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.5e-74 283.5 241 61.4
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 2.5e-74 283.5 243 61.3
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 3.2e-74 283.1 236 63.6
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 5.5e-74 282.3 238 58.4
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 5.5e-74 282.3 228 63.6
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.5e-74 282.3 237 63.7
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.5e-74 282.3 176 75.0
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 7.2e-74 282.0 242 62.0
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.2e-73 281.2 194 72.7
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.2e-73 281.2 177 76.3
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.6e-73 280.8 220 61.4
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.1e-73 280.4 176 71.6
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.1e-73 280.4 236 61.9
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-73 280.4 201 70.1
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 2.8e-73 280.0 250 59.2
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.7e-73 279.3 237 61.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 8.0e-73 278.5 231 59.3
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 8.0e-73 278.5 245 60.0
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 8.0e-73 278.5 249 58.6
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.4e-72 277.7 176 71.6
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 3.0e-72 276.6 192 68.2
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 4.0e-72 276.2 176 71.0
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.8e-72 275.4 190 68.9
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 8.8e-72 275.0 245 57.1
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 8.8e-72 275.0 245 57.1
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 8.8e-72 275.0 243 60.5
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.5e-71 274.2 176 75.0
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.5e-71 274.2 227 61.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 2.0e-71 273.9 247 59.1
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.0e-71 273.9 219 63.5
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 7.5e-71 271.9 244 56.6
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 9.8e-71 271.6 252 57.5
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-70 270.4 191 68.1
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 3.7e-70 269.6 239 61.5
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 8.3e-70 268.5 223 60.5
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 1.1e-69 268.1 252 57.1
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.8e-69 267.3 252 57.1
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.4e-69 266.9 183 70.5
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 4.1e-69 266.2 185 70.3
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.2e-68 264.6 176 71.0
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 3.5e-68 263.1 154 81.8
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 3.8e-67 259.6 234 61.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.5e-66 256.9 155 78.1
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 3.3e-66 256.5 247 58.7
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.3e-66 256.1 147 82.3
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-65 254.2 235 60.9
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.4e-64 251.1 249 56.6
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 2.6e-63 246.9 180 69.4
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.3e-62 244.6 148 77.0
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 3.7e-62 243.0 234 53.8
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 3.7e-62 243.0 159 71.7
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 1.1e-61 241.5 239 55.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 7.0e-61 238.8 205 58.5
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.0e-59 235.0 221 58.8
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 6.2e-57 225.7 197 59.4
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 3.1e-56 223.4 224 56.7
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.2e-52 211.5 222 47.3
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.6e-52 211.1 231 46.3
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 2.7e-52 210.3 132 76.5
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 3.9e-51 206.5 241 50.2
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 7.3e-50 202.2 238 51.7
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 4.3e-42 176.4 123 64.2
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.5e-42 175.3 148 63.5
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.7e-33 146.4 90 75.6
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 4.0e-32 143.3 90 74.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.0e-32 143.3 136 58.8
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 8.4e-30 135.6 96 65.6
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-29 134.8 102 64.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.9e-29 134.4 93 68.8
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.2e-21 107.1 176 38.1
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.7e-20 104.0 90 61.1
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 3.5e-20 103.6 150 41.3
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 6.7e-19 99.4 69 71.0
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 8.7e-19 99.0 106 53.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.4e-16 90.9 218 31.2
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.2e-15 88.6 174 40.2
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 4.5e-15 86.7 170 32.9
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.3e-14 85.1 53 73.6
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 3.8e-14 83.6 133 32.3
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 3.2e-13 80.5 172 30.8
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 4.2e-13 80.1 131 35.9
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 5.6e-10 69.7 123 33.3
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.6e-10 68.9 111 41.4
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 9.6e-10 68.9 99 51.5
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.4e-08 65.1 82 41.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.4e-08 64.3 118 33.1
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 4.0e-08 63.5 50 60.0
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.2e-06 57.8 97 44.3


User provided reference genes

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