Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 0.0e+00 1428.7 716 100.0
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 5.2e-304 1047.3 716 73.7
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.4e-303 1044.6 722 74.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 2.8e-297 1025.0 721 72.0
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.6e-297 1024.6 729 71.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 6.1e-289 997.3 701 73.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.0e-288 996.5 721 70.7
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.2e-286 988.8 719 70.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 6.0e-284 980.7 736 69.2
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.1e-280 969.9 719 69.8
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.1e-280 968.4 704 70.6
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.3e-278 963.0 699 71.5
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-277 959.9 703 69.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.5e-276 954.9 722 67.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.0e-275 953.4 720 68.6
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.1e-274 949.9 698 68.9
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.8e-273 945.3 720 68.3
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 8.1e-273 943.7 719 67.3
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.1e-272 943.3 735 66.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-272 943.0 710 68.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 3.1e-272 941.8 721 66.4
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 8.9e-272 940.3 728 67.3
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 3.4e-271 938.3 718 66.4
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 7.6e-271 937.2 715 66.6
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.1e-269 933.3 742 66.0
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.7e-268 928.7 800 61.8
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.1e-266 923.3 721 65.9
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.5e-266 922.9 698 67.6
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 5.6e-266 921.0 721 66.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 7.3e-266 920.6 723 66.1
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.6e-265 919.5 699 66.4
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.8e-265 918.7 721 65.5
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.8e-264 916.0 701 67.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.4e-264 915.6 715 66.7
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 3.1e-264 915.2 699 66.4
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.5e-263 912.9 697 68.0
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 7.6e-263 910.6 724 65.3
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.9e-263 910.2 699 65.8
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.3e-262 909.8 722 65.9
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.3e-262 909.8 728 64.8
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.7e-262 909.4 699 66.0
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.1e-261 906.7 718 65.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 1.3e-259 899.8 718 65.2
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 3.9e-259 898.3 699 65.5
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.5e-258 895.6 704 64.8
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 3.3e-258 895.2 700 65.7
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.8e-257 891.3 729 62.8
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 4.8e-257 891.3 721 64.5
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 9.0e-256 887.1 717 63.7
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.0e-255 885.9 704 64.1
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 3.4e-255 885.2 728 63.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.9e-255 883.6 682 66.9
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.9e-253 879.4 727 63.4
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.2e-253 878.2 720 63.9
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 9.3e-253 877.1 714 62.9
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 2.1e-252 875.9 718 64.6
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 4.6e-252 874.8 730 62.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 4.6e-252 874.8 721 62.7
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 7.9e-252 874.0 717 63.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.3e-251 873.2 704 63.9
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.5e-250 869.8 723 63.9
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.9e-250 869.4 698 65.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.3e-250 868.2 720 63.3
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.3e-250 868.2 718 63.9
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.6e-249 866.3 703 64.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.8e-248 862.8 755 60.9
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 3.1e-248 862.1 715 62.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.1e-248 862.1 703 64.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.2e-247 860.1 718 62.3
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.2e-247 860.1 719 62.3
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.9e-246 855.5 729 61.7
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.9e-246 855.5 697 62.0
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 4.9e-246 854.7 700 63.7
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.1e-245 853.6 715 61.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.5e-244 848.6 735 61.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 7.9e-244 847.4 717 61.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 6.7e-243 844.3 724 60.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 6.7e-243 844.3 715 60.6
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-242 843.6 705 62.7
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.1e-242 843.6 723 61.3
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.6e-242 841.3 715 60.8
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 5.6e-242 841.3 683 64.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 9.6e-242 840.5 715 62.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.3e-238 830.1 715 60.0
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.2e-237 825.5 705 61.0
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 5.5e-237 824.7 712 59.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 7.1e-237 824.3 726 59.5
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 7.1e-237 824.3 715 60.6
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 9.3e-237 823.9 678 64.2
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-236 823.2 726 59.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-236 823.2 725 59.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 4.6e-236 821.6 729 59.9
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 6.0e-236 821.2 701 61.1
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 6.0e-236 821.2 715 60.4
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 7.9e-236 820.8 725 59.0
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.3e-235 819.3 667 64.6
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 6.7e-235 817.8 717 60.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.1e-234 817.0 634 67.0
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 5.7e-234 814.7 723 59.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 8.2e-233 810.8 699 61.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.2e-231 807.0 705 60.0
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.9e-229 799.7 714 59.2
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 9.3e-229 797.3 656 63.7
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.2e-228 797.0 726 59.5
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.1e-228 796.2 724 59.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.4e-224 782.7 726 57.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 7.7e-223 777.7 740 56.6
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.4e-221 770.8 725 57.2
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.7e-217 760.0 706 57.4
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.0e-215 753.1 609 66.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.4e-211 740.3 723 54.6
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-211 740.0 736 55.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.7e-210 734.9 740 55.1
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.4e-208 730.3 638 61.8
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.6e-207 726.1 724 55.4
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 9.4e-205 717.6 714 54.3
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.2e-201 706.4 577 64.6
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.1e-200 702.6 700 54.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.5e-197 693.0 546 68.3
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 6.1e-196 688.3 720 51.7
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.0e-194 683.3 714 52.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.7e-194 681.8 567 64.7
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.2e-191 674.1 617 59.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.2e-190 669.8 726 52.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-189 665.2 560 64.6
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.5e-183 646.0 574 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.8e-182 642.5 665 52.0
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.9e-181 640.2 723 49.0
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 5.2e-171 605.5 486 63.2
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 3.0e-158 563.1 705 45.8
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.3e-137 494.6 336 72.3
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.5e-133 481.1 575 48.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.9e-133 480.7 896 36.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.5e-113 412.5 437 53.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.4e-107 394.8 257 75.9
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.8e-107 394.4 258 75.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 9.8e-77 292.4 518 36.9
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 7.7e-74 282.7 352 46.9
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-69 268.1 323 46.1
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 3.7e-52 210.7 540 32.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.0e-49 200.3 189 55.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.3e-41 175.6 116 70.7
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 8.6e-41 172.9 283 38.5
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.3e-40 171.0 137 64.2
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-37 162.5 122 65.6
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 7.6e-29 133.3 121 54.5
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.7e-28 132.1 121 54.5
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.9e-27 128.6 159 44.7
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 3.2e-27 127.9 318 31.8
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 2.4e-19 101.7 316 29.7
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 5.4e-19 100.5 176 39.8
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.1e-19 100.1 121 47.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 4.6e-18 97.4 195 35.4
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 7.6e-13 80.1 106 44.3
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.7e-12 79.0 83 48.2
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.1e-11 76.3 92 41.3
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-11 75.1 45 73.3
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-10 72.0 67 52.2
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-10 72.0 67 52.2
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.9e-10 70.1 49 65.3
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 3.0e-09 68.2 59 59.3
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.4e-08 63.5 37 81.1


User provided reference genes

Program Settings