Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold79G25586 Striga asiatica HOM05D025847 ORTHO05D398914 4.2e-104 381.3 190 100.0
SGA_v2.0_scaffold51G18808 Striga asiatica HOM05D025847 ORTHO05D403652 1.0e-49 200.7 165 71.5
SGA_v2.0_scaffold2G01127 Striga asiatica HOM05D025847 ORTHO05D404357 2.8e-47 192.6 152 71.1
SGA_v2.0_scaffold139G35370 Striga asiatica HOM05D025847 ORTHO05D405514 1.2e-29 134.0 65 98.5
SGA_v2.0_scaffold95G28864 Striga asiatica HOM05D000487 ORTHO05D000405 1.2e-21 107.5 78 73.1
MSTRG.20804 Avicennia marina HOM05D000487 ORTHO05D000405 9.4e-11 71.2 63 58.7
MSTRG.17240 Avicennia marina HOM05D000487 ORTHO05D000405 1.1e-08 64.3 63 60.3
MSTRG.21995 Avicennia marina HOM05D001098 ORTHO05D003515 1.5e-08 63.9 67 58.2
PGR083G2776 Punica granatum HOM05D001098 ORTHO05D003515 2.6e-08 63.2 51 66.7
Migut.B01703 Erythranthe guttata HOM05D000487 ORTHO05D000405 3.3e-08 62.8 63 50.8
SGA_v2.0_scaffold12G06145 Striga asiatica HOM05D001098 ORTHO05D003515 3.3e-08 62.8 51 70.6
Actinidia39858 Actinidia chinensis HOM05D001098 ORTHO05D003515 4.4e-08 62.4 49 69.4
Thhalv10001470m.g Eutrema salsugineum HOM05D001098 ORTHO05D003515 5.7e-08 62.0 51 66.7
AL4G41900 Arabidopsis lyrata HOM05D001098 ORTHO05D003515 9.7e-08 61.2 51 66.7
Carub.0004s2571 Capsella rubella HOM05D001098 ORTHO05D003515 9.7e-08 61.2 51 66.7
CARHR138320 Cardamine hirsuta HOM05D001098 ORTHO05D003515 1.3e-07 60.8 51 66.7
Actinidia11309 Actinidia chinensis HOM05D001098 ORTHO05D003515 1.7e-07 60.5 49 67.3
BcaC02g07198 Brassica carinata HOM05D001098 ORTHO05D003515 1.7e-07 60.5 51 62.7
C04p70210 Brassica napus HOM05D001098 ORTHO05D003515 1.7e-07 60.5 51 62.7
Carub.0005s2609 Capsella rubella HOM05D001098 ORTHO05D003515 1.7e-07 60.5 51 66.7
Migut.G01025 Erythranthe guttata HOM05D001098 ORTHO05D003515 1.7e-07 60.5 49 67.3
Manes.11G116200 Manihot esculenta HOM05D001098 ORTHO05D003515 1.7e-07 60.5 49 65.3
Sp4g25370 Schrenkiella parvula HOM05D001098 ORTHO05D003515 1.7e-07 60.5 51 64.7
Sc19g0002170 Simmondsia chinensis HOM05D001098 ORTHO05D003515 1.7e-07 60.5 51 62.7
Atru.chr3.1600 Acer truncatum HOM05D001098 ORTHO05D003515 2.2e-07 60.1 51 66.7
Atru.chr3.1608 Acer truncatum HOM05D001098 ORTHO05D003515 2.2e-07 60.1 51 66.7
AT2G43240 Arabidopsis thaliana HOM05D001098 ORTHO05D003515 2.2e-07 60.1 51 64.7
Eucgr.A00254 Eucalyptus grandis HOM05D001098 ORTHO05D003515 2.2e-07 60.1 51 62.7
Thhalv10006015m.g Eutrema salsugineum HOM05D001098 ORTHO05D003515 2.2e-07 60.1 51 66.7
PGR142G0121 Punica granatum HOM05D001098 ORTHO05D003515 2.2e-07 60.1 49 65.3
Rhsim02G0075800 Rhododendron simsii HOM05D001098 ORTHO05D003515 2.2e-07 60.1 49 67.3
vmacro15641 Vaccinium macrocarpon HOM05D001098 ORTHO05D003515 2.2e-07 60.1 49 67.3
ATR0743G220 Amborella trichopoda HOM05D001098 ORTHO05D003515 2.8e-07 59.7 49 63.3
CARHR169740 Cardamine hirsuta HOM05D001098 ORTHO05D003515 2.8e-07 59.7 51 64.7
unitig_8.g4799 Utricularia gibba HOM05D001098 ORTHO05D003515 2.8e-07 59.7 49 69.4
AL5G41220 Arabidopsis lyrata HOM05D001098 ORTHO05D003515 3.7e-07 59.3 51 64.7
AT3G59360 Arabidopsis thaliana HOM05D001098 ORTHO05D003515 3.7e-07 59.3 51 64.7
BcaB01g03402 Brassica carinata HOM05D001098 ORTHO05D003515 3.7e-07 59.3 51 60.8
A04p32520 Brassica napus HOM05D001098 ORTHO05D003515 3.7e-07 59.3 51 62.7
BraA04t18716Z Brassica rapa HOM05D001098 ORTHO05D003515 3.7e-07 59.3 51 62.7
Nn1g09874 Nelumbo nucifera HOM05D001098 ORTHO05D003515 3.7e-07 59.3 49 65.3
THA.LOC104802300 Tarenaya hassleriana HOM05D001098 ORTHO05D003515 3.7e-07 59.3 51 58.8
MSTRG.24584 Avicennia marina HOM05D001098 ORTHO05D003515 4.8e-07 58.9 49 69.4
BcaC01g05248 Brassica carinata HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 60.8
A03p24140 Brassica napus HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 60.8
C03p28730 Brassica napus HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 60.8
BolC3t15235H Brassica oleracea HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 60.8
BraA03t11624Z Brassica rapa HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 60.8
ECA233G5431 Erigeron canadensis HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 62.7
THA.LOC104803609 Tarenaya hassleriana HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 58.8
Thecc.05G185000 Theobroma cacao HOM05D001098 ORTHO05D003515 4.8e-07 58.9 51 64.7
COL.COLO4_14417 Corchorus olitorius HOM05D001098 ORTHO05D003515 6.3e-07 58.5 49 67.3
Dinv22694 Davidia involucrata HOM05D001098 ORTHO05D003515 6.3e-07 58.5 48 68.8
Oeu034469.1 Olea europaea HOM05D001098 ORTHO05D003515 6.3e-07 58.5 49 65.3
Potri.017G035800 Populus trichocarpa HOM05D001098 ORTHO05D003515 6.3e-07 58.5 51 62.7
Prupe.1G187700 Prunus persica HOM05D001098 ORTHO05D003515 6.3e-07 58.5 49 65.3
VMungo0720G2121 Vigna mungo HOM05D001098 ORTHO05D003515 6.3e-07 58.5 51 64.7
GSVIVG01013580001 Vitis vinifera HOM05D001098 ORTHO05D003515 6.3e-07 58.5 49 67.3
BolC4t28525H Brassica oleracea HOM05D001098 ORTHO05D003515 8.2e-07 58.2 51 60.8
Dinv21354 Davidia involucrata HOM05D001098 ORTHO05D003515 8.2e-07 58.2 49 61.2
Lsat_1_v5_gn_1_71640 Lactuca sativa HOM05D001098 ORTHO05D003515 8.2e-07 58.2 49 63.3
SalBow3G4600 Salvia bowleyana HOM05D001098 ORTHO05D003515 8.2e-07 58.2 49 65.3
Thecc.05G002800 Theobroma cacao HOM05D001098 ORTHO05D003515 8.2e-07 58.2 49 65.3
Actinidia35960 Actinidia chinensis HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
arahy.Tifrunner.gnm1.ann1.8ZHK7B Arachis hypogaea HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
arahy.Tifrunner.gnm1.ann1.UD8U5Y Arachis hypogaea HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
EL10Ac3g06301 Beta vulgaris HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
BcaC07g40278 Brassica carinata HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
BcaC07g40460 Brassica carinata HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
A04p02190 Brassica napus HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
A09p51630 Brassica napus HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
C08p34400 Brassica napus HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
BolC4t24909H Brassica oleracea HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
BolC8t51041H Brassica oleracea HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
BraA09t40603Z Brassica rapa HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
CsaV3_6G003740 Cucumis sativus L. HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 69.4
Duzib093G0299 Durio zibethinus HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Gohir.A11G329800 Gossypium hirsutum HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Gohir.D08G275200 Gossypium hirsutum HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Gohir.D11G349000 Gossypium hirsutum HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Gorai.004G293600 Gossypium raimondii HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Gorai.007G379300 Gossypium raimondii HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Hma1.2p1_0597F.1_g186470 Hydrangea macrophylla HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 63.3
Lalb_Chr06g0164491 Lupinus albus HOM05D001098 ORTHO05D003515 1.1e-06 57.8 51 60.8
MD13G1273000 Malus domestica HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Manes.12G001900 Manihot esculenta HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Manes.13G001200 Manihot esculenta HOM05D001098 ORTHO05D003515 1.1e-06 57.8 49 65.3
Aa31LG1G25050 Aethionema arabicum HOM05D001098 ORTHO05D003515 1.4e-06 57.4 51 62.7
Glyma.20G246100 Glycine max HOM05D001098 ORTHO05D003515 1.4e-06 57.4 51 62.7
Potri.010G180500 Populus trichocarpa HOM05D001098 ORTHO05D003515 1.4e-06 57.4 49 63.3
Sp5g03760 Schrenkiella parvula HOM05D001098 ORTHO05D003515 1.4e-06 57.4 50 64.0
Aqoxy2G04114 Aquilegia oxysepala HOM05D001098 ORTHO05D003515 1.8e-06 57.0 49 65.3
CANSAT54G1180 Cannabis sativa HOM05D001098 ORTHO05D003515 1.8e-06 57.0 51 60.8
Cpa.g.sc71.26 Carica papaya HOM05D001098 ORTHO05D003515 1.8e-06 57.0 88 47.7
MELO3C011623.2 Cucumis melo HOM05D001098 ORTHO05D003515 1.8e-06 57.0 49 67.3
Lsat_1_v5_gn_2_51900 Lactuca sativa HOM05D001098 ORTHO05D003515 1.8e-06 57.0 51 60.8
MBI08_g46113_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D003515 1.8e-06 57.0 49 61.2
MD04G1037800 Malus domestica HOM05D001098 ORTHO05D003515 1.8e-06 57.0 49 65.3
TAR362G0247 Trochodendron aralioides HOM05D001098 ORTHO05D003515 1.8e-06 57.0 49 65.3
GSVIVG01003756001 Vitis vinifera HOM05D001098 ORTHO05D003515 1.8e-06 57.0 49 61.2
AUR62030022 Chenopodium quinoa HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 58.8
Ciclev10011853m.g Citrus clementina HOM05D001098 ORTHO05D003515 2.4e-06 56.6 67 52.2
Dinv44216 Davidia involucrata HOM05D001098 ORTHO05D003515 2.4e-06 56.6 49 65.3
FvH4_4g11380 Fragaria vesca HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 60.8
FAN17G2346 Fragaria x ananassa HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 60.8
Glyma.10G296000 Glycine max HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 62.7
Lsat_1_v5_gn_6_55000 Lactuca sativa HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 56.9
Lalb_Chr02g0144331 Lupinus albus HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 60.8
MBI11_g35031_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D003515 2.4e-06 56.6 49 61.2
RcHm_v2.0_Chr4g0407851 Rosa chinensis HOM05D001098 ORTHO05D003515 2.4e-06 56.6 51 60.8
SEGI_11600 Sequoiadendron giganteum HOM05D001098 ORTHO05D003515 2.4e-06 56.6 49 59.2
BcaB06g29292 Brassica carinata HOM05D001098 ORTHO05D003515 3.1e-06 56.2 51 60.8
BraA04t15948Z Brassica rapa HOM05D001098 ORTHO05D003515 3.1e-06 56.2 50 62.0
CAN.G710.62 Capsicum annuum HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 59.2
AUR62002604 Chenopodium quinoa HOM05D001098 ORTHO05D003515 3.1e-06 56.2 51 58.8
Ciclev10020426m.g Citrus clementina HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 65.3
Duzib106G0563 Durio zibethinus HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 61.2
HanXRQChr05g0160081 Helianthus annuus HOM05D001098 ORTHO05D003515 3.1e-06 56.2 102 36.3
Lj6C60G7 Lonicera japonica HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 63.3
Os04g0490600 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 63.3
Peaxi162Scf00286g00116 Petunia axillaris HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 59.2
Phvul.007G003900 Phaseolus vulgaris HOM05D001098 ORTHO05D003515 3.1e-06 56.2 51 62.7
Solyc09g098520.4 Solanum lycopersicum HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 59.2
Sopen09g036440 Solanum pennellii HOM05D001098 ORTHO05D003515 3.1e-06 56.2 49 59.2
Lj5g0027220 Lotus japonicus HOM05D001098 ORTHO05D003515 4.1e-06 55.8 51 62.7
Hund22601 Selenicereus undatus HOM05D001098 ORTHO05D003515 4.1e-06 55.8 51 58.8
TWI18G0847 Tripterygium wilfordii HOM05D001098 ORTHO05D003515 4.1e-06 55.8 49 59.2
TAR633G0110 Trochodendron aralioides HOM05D001098 ORTHO05D003515 4.1e-06 55.8 49 63.3
unitig_578.g16268 Utricularia gibba HOM05D001098 ORTHO05D003515 4.1e-06 55.8 49 65.3
Cfa015774 Carpinus fangiana HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 63.3
ClCG08G004290 Citrullus lanatus HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 65.3
Haze_00721 Corylus avellana HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 63.3
FAN07G1473 Fragaria x ananassa HOM05D001098 ORTHO05D003515 5.3e-06 55.5 51 58.8
HanXRQChr07g0186261 Helianthus annuus HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 61.2
Medtr1g116565 Medicago truncatula HOM05D001098 ORTHO05D003515 5.3e-06 55.5 51 60.8
Nitab4.5_0001049g0120 Nicotiana tabacum HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 59.2
Nitab4.5_0002908g0090 Nicotiana tabacum HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 59.2
Potri.008G077300 Populus trichocarpa HOM05D001098 ORTHO05D003515 5.3e-06 55.5 49 61.2
C04p33450 Brassica napus HOM05D001098 ORTHO05D003515 7.0e-06 55.1 48 62.5
CiPaw.08G112200 Carya illinoinensis HOM05D001098 ORTHO05D003515 7.0e-06 55.1 49 59.2
DCAR_027528 Daucus carota HOM05D001098 ORTHO05D003515 7.0e-06 55.1 49 61.2
Gorai.013G111800 Gossypium raimondii HOM05D001098 ORTHO05D003515 7.0e-06 55.1 49 61.2
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 7.0e-06 55.1 51 56.9
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 7.0e-06 55.1 51 56.9
Lsat_1_v5_gn_1_86401 Lactuca sativa HOM05D000819 ORTHO05D000661 7.0e-06 55.1 51 56.9
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 7.0e-06 55.1 51 56.9
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 7.0e-06 55.1 51 56.9
TWI36G1504 Tripterygium wilfordii HOM05D001098 ORTHO05D003515 7.0e-06 55.1 49 59.2
Actinidia34622 Actinidia chinensis HOM05D001098 ORTHO05D003515 9.1e-06 54.7 49 61.2
Duzib128G1666 Durio zibethinus HOM05D001098 ORTHO05D003515 9.1e-06 54.7 49 59.2
Eucgr.H00419 Eucalyptus grandis HOM05D001098 ORTHO05D003515 9.1e-06 54.7 49 63.3
Sed0004441 Sechium edule HOM05D001098 ORTHO05D003515 9.1e-06 54.7 49 61.2


User provided reference genes

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