Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 4.6e-100 367.9 181 100.0
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 3.7e-97 358.2 181 96.1
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 4.2e-69 265.0 180 71.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 6.1e-68 261.2 185 71.9
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 6.1e-68 261.2 169 75.7
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.0e-68 260.8 179 70.4
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 2.3e-67 259.2 179 69.8
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.3e-67 259.2 179 69.8
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.9e-67 258.5 180 69.4
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 3.9e-67 258.5 170 74.7
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 5.2e-67 258.1 182 69.2
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 5.2e-67 258.1 180 69.4
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 8.8e-67 257.3 175 71.4
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 2.0e-66 256.1 179 70.4
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 2.6e-66 255.8 174 72.4
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 4.4e-66 255.0 169 72.2
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.3e-65 253.4 182 67.6
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.7e-65 253.1 173 73.4
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.8e-65 252.3 182 68.7
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 2.8e-65 252.3 172 72.7
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 3.7e-65 251.9 182 66.5
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 8.2e-65 250.8 171 69.6
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 8.2e-65 250.8 171 70.2
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.1e-64 250.4 182 67.0
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.4e-64 250.0 182 65.9
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.4e-64 250.0 179 68.7
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.8e-64 249.6 177 67.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 2.4e-64 249.2 167 70.1
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.4e-64 249.2 182 69.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.4e-64 249.2 182 66.5
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 3.1e-64 248.8 182 66.5
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 4.1e-64 248.4 161 73.3
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 4.1e-64 248.4 182 67.6
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 4.1e-64 248.4 179 67.6
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.3e-64 248.1 177 68.4
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 7.0e-64 247.7 185 67.6
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 7.0e-64 247.7 169 69.8
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 7.0e-64 247.7 171 70.2
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.2e-63 246.9 169 69.8
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.6e-63 246.5 167 71.9
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-63 246.5 181 65.7
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.0e-63 246.1 169 71.6
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.0e-63 246.1 179 67.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.0e-63 246.1 167 73.1
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.6e-63 245.7 169 71.6
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 3.5e-63 245.4 173 70.5
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 3.5e-63 245.4 177 66.7
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 3.5e-63 245.4 170 68.8
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 3.5e-63 245.4 172 68.6
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 4.5e-63 245.0 171 70.2
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.0e-62 243.8 171 69.6
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.0e-62 243.8 171 70.2
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.0e-62 243.8 123 95.1
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.2e-62 242.7 169 68.0
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 2.2e-62 242.7 172 68.6
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.9e-62 242.3 181 67.4
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 2.9e-62 242.3 179 66.5
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 2.9e-62 242.3 177 66.1
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 2.9e-62 242.3 181 66.3
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.9e-62 242.3 171 69.6
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.9e-62 242.3 172 68.6
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 5.0e-62 241.5 171 67.8
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 6.5e-62 241.1 194 61.3
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 8.5e-62 240.7 171 67.8
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 8.5e-62 240.7 171 69.0
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 8.5e-62 240.7 171 69.0
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-61 240.4 171 67.3
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-61 240.4 171 67.3
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.1e-61 240.4 171 67.3
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.5e-61 240.0 177 67.2
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.5e-61 240.0 177 67.2
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.5e-61 240.0 171 68.4
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.5e-61 240.0 178 66.9
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 2.5e-61 239.2 150 73.3
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 2.5e-61 239.2 171 68.4
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.5e-61 239.2 148 76.4
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.2e-61 238.8 181 65.2
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 5.5e-61 238.0 150 74.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 7.2e-61 237.7 177 65.0
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 9.4e-61 237.3 184 63.0
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.2e-60 236.9 178 64.0
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.6e-60 236.5 178 64.0
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.6e-60 236.5 185 63.8
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 2.1e-60 236.1 177 64.4
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.1e-60 236.1 180 65.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 2.1e-60 236.1 182 65.4
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 2.7e-60 235.7 179 66.5
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.7e-60 235.7 150 72.0
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.7e-60 235.0 171 67.3
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.7e-60 235.0 171 67.3
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 6.1e-60 234.6 175 65.7
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.0e-59 233.8 177 64.4
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.4e-59 233.4 168 66.1
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 1.8e-59 233.0 175 63.4
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 3.0e-59 232.3 170 68.2
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 5.2e-59 231.5 174 64.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 2.6e-58 229.2 170 66.5
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.3e-58 228.8 179 63.7
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.7e-57 226.5 167 64.7
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.2e-57 226.1 171 65.5
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 8.3e-57 224.2 181 61.3
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.8e-56 223.0 181 60.8
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.9e-53 213.0 170 64.1
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 7.2e-53 211.1 166 65.1
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.4e-51 206.8 169 59.8
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 3.7e-49 198.7 177 59.3
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 3.7e-49 198.7 149 63.8
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 9.1e-48 194.1 169 59.2
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 9.1e-48 194.1 150 62.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.3e-46 190.3 173 57.2
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.5e-45 186.8 150 61.3
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.6e-44 183.3 181 54.7
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.1e-44 183.0 123 69.9
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 2.8e-44 182.6 166 56.6
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.8e-43 179.9 151 57.0
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.3e-43 179.5 122 68.9
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 6.8e-43 177.9 161 57.1
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.1e-37 160.6 117 67.5
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.3e-37 159.1 110 70.9
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 5.8e-34 148.3 129 53.5
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 4.9e-33 145.2 91 76.9
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.3e-30 136.3 145 46.2
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 1.5e-29 133.7 133 48.1
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 4.3e-29 132.1 82 73.2
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 8.0e-28 127.9 168 45.8
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-24 117.5 146 43.8
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-24 117.1 179 44.7
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.4e-24 117.1 179 44.7
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.0e-22 110.9 157 41.4
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 3.1e-19 99.4 51 86.3
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 6.8e-19 98.2 71 67.6
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 6.8e-19 98.2 146 39.7
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 6.8e-19 98.2 146 39.7
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 2.2e-17 93.2 120 40.0
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 2.3e-14 83.2 61 65.6
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.1e-08 64.3 55 54.5


User provided reference genes

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