Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.2e-203 712.2 390 100.0
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 2.5e-79 300.1 163 97.5
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 3.1e-77 293.1 163 95.1
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 4.1e-77 292.7 163 95.1
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.2e-76 291.2 163 94.5
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 3.8e-75 286.2 163 92.6
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.5e-75 285.4 157 96.2
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.9e-74 283.9 163 92.6
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.9e-74 283.9 156 94.2
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.9e-74 283.9 163 92.6
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 2.5e-74 283.5 163 92.6
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 2.5e-74 283.5 163 92.6
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.2e-74 283.1 163 92.6
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 4.2e-74 282.7 156 94.2
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 4.2e-74 282.7 155 96.1
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 4.2e-74 282.7 157 93.6
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 4.2e-74 282.7 155 95.5
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 5.5e-74 282.3 163 92.0
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 7.2e-74 282.0 163 93.3
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 7.2e-74 282.0 163 93.3
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.2e-73 281.2 157 94.3
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.2e-73 281.2 157 94.3
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.2e-73 281.2 163 92.0
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.6e-73 280.8 157 93.6
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.1e-73 280.4 163 90.8
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.1e-73 280.4 163 90.8
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.1e-73 280.4 163 92.0
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.1e-73 280.4 157 94.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 2.1e-73 280.4 154 95.5
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 2.7e-73 280.0 154 95.5
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 3.6e-73 279.6 157 93.0
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.6e-73 279.6 156 94.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.7e-73 279.3 157 93.6
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 4.7e-73 279.3 157 93.6
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 4.7e-73 279.3 163 89.6
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 6.1e-73 278.9 156 92.9
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 6.1e-73 278.9 157 93.0
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 6.1e-73 278.9 155 94.2
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 6.1e-73 278.9 156 94.2
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.0e-72 278.1 155 92.9
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.0e-72 278.1 163 91.4
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.4e-72 277.7 156 91.7
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 1.4e-72 277.7 154 93.5
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.4e-72 277.7 163 91.4
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.8e-72 277.3 157 93.0
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.3e-72 276.9 157 93.0
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 2.3e-72 276.9 159 91.8
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 3.9e-72 276.2 157 91.7
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 5.1e-72 275.8 155 91.6
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.1e-72 275.8 157 92.4
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 6.7e-72 275.4 157 91.1
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.7e-72 275.4 154 94.2
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 6.7e-72 275.4 157 90.4
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 6.7e-72 275.4 158 91.8
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 8.8e-72 275.0 157 92.4
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 8.8e-72 275.0 159 91.2
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.1e-71 274.6 162 89.5
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.1e-71 274.6 157 90.4
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.1e-71 274.6 157 90.4
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.5e-71 274.2 170 85.3
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.0e-71 273.9 157 89.8
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 2.6e-71 273.5 170 85.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.6e-71 273.5 157 89.8
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.3e-71 273.1 157 91.1
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.3e-71 273.1 159 90.6
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 3.3e-71 273.1 159 89.9
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 3.3e-71 273.1 155 90.3
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 3.3e-71 273.1 157 91.1
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 4.4e-71 272.7 170 84.7
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 4.4e-71 272.7 155 91.0
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.4e-71 272.7 157 89.8
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 5.7e-71 272.3 170 84.1
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 5.7e-71 272.3 157 90.4
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 5.7e-71 272.3 156 91.7
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 7.4e-71 271.9 170 84.1
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 7.4e-71 271.9 157 89.2
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 9.7e-71 271.6 157 87.9
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 9.7e-71 271.6 156 91.0
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 9.7e-71 271.6 156 90.4
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 9.7e-71 271.6 157 89.8
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.3e-70 271.2 155 89.0
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.7e-70 270.8 157 89.2
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.2e-70 270.4 170 84.1
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 2.2e-70 270.4 170 83.5
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 2.2e-70 270.4 156 91.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 2.2e-70 270.4 154 90.3
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.8e-70 270.0 156 89.7
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.8e-70 270.0 170 83.5
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 2.8e-70 270.0 156 90.4
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 2.8e-70 270.0 170 83.5
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 2.8e-70 270.0 157 89.2
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 2.8e-70 270.0 154 90.9
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 3.7e-70 269.6 170 83.5
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 3.7e-70 269.6 154 90.9
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 3.7e-70 269.6 154 90.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 3.7e-70 269.6 157 89.2
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 4.8e-70 269.2 170 82.9
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 6.3e-70 268.9 154 89.6
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 8.2e-70 268.5 170 82.9
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 8.2e-70 268.5 170 82.9
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 8.2e-70 268.5 170 82.9
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 8.2e-70 268.5 170 82.9
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 8.2e-70 268.5 170 82.9
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 8.2e-70 268.5 154 89.0
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 8.2e-70 268.5 157 89.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-69 267.7 170 82.9
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.4e-69 267.7 154 89.6
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.8e-69 267.3 154 89.0
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 7.0e-69 265.4 157 86.0
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 9.1e-69 265.0 170 82.4
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.6e-68 264.2 154 88.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.0e-68 263.8 157 87.9
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.0e-68 263.8 157 86.6
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.7e-67 260.8 160 85.0
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.9e-67 260.0 157 87.3
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 6.5e-67 258.8 236 65.7
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.5e-66 257.7 160 84.4
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.5e-66 256.9 157 85.4
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 8.8e-64 248.4 157 82.8
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 3.5e-60 236.5 157 79.0
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 2.2e-59 233.8 156 77.6
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 4.0e-56 223.0 154 77.9
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.2e-55 221.5 181 65.7
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-55 219.2 158 74.1
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.3e-54 218.0 182 66.5
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 4.7e-49 199.5 122 91.0
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 9.8e-47 191.8 120 86.7
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.2e-46 190.7 109 93.6
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.6e-44 184.5 110 87.3
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.7e-44 183.7 110 90.0
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.7e-44 183.7 103 94.2
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.0e-43 181.8 118 83.9
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 6.1e-41 172.6 114 82.5
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.6e-36 156.4 89 92.1
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.9e-36 156.0 160 56.9
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 3.9e-35 153.3 89 87.6
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.6e-34 149.4 88 90.9
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 9.5e-34 148.7 92 82.6
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.7e-27 127.9 77 81.8
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.6e-23 114.0 64 87.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 6.4e-22 109.4 174 40.8
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 1.9e-21 107.8 143 51.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 8.1e-17 92.4 66 74.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 7.6e-15 85.9 63 68.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.9e-13 81.3 45 100.0
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.7e-11 74.7 52 73.1


User provided reference genes

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