Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold78G25462 Striga asiatica HOM05D006595 ORTHO05D008238 1.6e-90 336.3 192 100.0
SalBow6G7140 Salvia bowleyana HOM05D006595 ORTHO05D008238 2.2e-60 236.1 192 75.5
MSTRG.8324 Avicennia marina HOM05D006595 ORTHO05D008238 5.3e-54 214.9 192 72.9
MSTRG.208 Avicennia marina HOM05D006595 ORTHO05D008238 1.7e-52 209.9 192 71.9
Dinv13419 Davidia involucrata HOM05D006595 ORTHO05D008238 3.8e-52 208.8 195 71.3
PGSC0003DMG401032143 Solanum tuberosum HOM05D006595 ORTHO05D008238 1.0e-49 200.7 192 67.7
Gohir.A11G206900 Gossypium hirsutum HOM05D006595 ORTHO05D008238 2.6e-48 196.1 169 69.8
Gohir.D08G088800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 2.6e-48 196.1 169 69.8
Gohir.A08G079300 Gossypium hirsutum HOM05D006595 ORTHO05D008238 3.3e-48 195.7 169 69.8
CiPaw.13G171400 Carya illinoinensis HOM05D006595 ORTHO05D008238 5.7e-48 194.9 185 67.6
Migut.F01376 Erythranthe guttata HOM05D006595 ORTHO05D008238 5.7e-48 194.9 195 69.2
Gohir.D11G216800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 7.4e-48 194.5 169 69.2
Gorai.004G093500 Gossypium raimondii HOM05D006595 ORTHO05D008238 9.7e-48 194.1 169 69.2
Gorai.007G232900 Gossypium raimondii HOM05D006595 ORTHO05D008238 9.7e-48 194.1 189 64.6
Sopen01g002130 Solanum pennellii HOM05D006595 ORTHO05D008238 9.7e-48 194.1 192 66.1
Peaxi162Scf00441g00213 Petunia axillaris HOM05D006595 ORTHO05D008238 6.3e-47 191.4 192 65.6
Oeu038858.2 Olea europaea HOM05D006595 ORTHO05D008238 1.8e-46 189.9 188 67.6
Solyc01g006130.4 Solanum lycopersicum HOM05D006595 ORTHO05D008238 4.1e-46 188.7 188 65.4
Lj2A706G26 Lonicera japonica HOM05D006595 ORTHO05D008238 7.0e-46 188.0 165 71.5
Prupe.6G012000 Prunus persica HOM05D006595 ORTHO05D008238 7.0e-46 188.0 189 65.6
Ciclev10016858m.g Citrus clementina HOM05D006595 ORTHO05D008238 1.5e-45 186.8 163 69.3
Manes.03G089200 Manihot esculenta HOM05D006595 ORTHO05D008238 1.5e-45 186.8 187 66.8
Rhsim13G0228400 Rhododendron simsii HOM05D000750 ORTHO05D000714 3.4e-45 185.7 163 74.2
Atru.chr3.2190 Acer truncatum HOM05D006595 ORTHO05D008238 4.5e-45 185.3 165 70.3
Duzib168G0997 Durio zibethinus HOM05D006595 ORTHO05D008238 1.7e-44 183.3 156 73.1
Potri.001G009800 Populus trichocarpa HOM05D006595 ORTHO05D008238 2.2e-44 183.0 194 62.9
CAN.G140.24 Capsicum annuum HOM05D006595 ORTHO05D008238 2.9e-44 182.6 192 65.6
QL01p010272 Quercus lobata HOM05D006595 ORTHO05D008238 6.5e-44 181.4 184 64.1
TAR636G1600 Trochodendron aralioides HOM05D006595 ORTHO05D008238 1.9e-43 179.9 185 65.4
Dinv34743 Davidia involucrata HOM05D006595 ORTHO05D008238 3.2e-43 179.1 129 84.5
CSS0011176 Camellia sinensis var. sinensis HOM05D006595 ORTHO05D008238 4.2e-43 178.7 157 73.9
Nn7g35969 Nelumbo nucifera HOM05D006595 ORTHO05D008238 4.2e-43 178.7 193 63.7
Cfa009626 Carpinus fangiana HOM05D006595 ORTHO05D008238 9.4e-43 177.6 185 63.2
MD03G1011600 Malus domestica HOM05D006595 ORTHO05D008238 9.4e-43 177.6 188 63.8
Haze_22995 Corylus avellana HOM05D006595 ORTHO05D008238 1.2e-42 177.2 185 63.2
FAN17G0104 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-41 172.6 195 63.1
Nitab4.5_0001620g0030 Nicotiana tabacum HOM05D006595 ORTHO05D008238 3.9e-41 172.2 193 55.4
FAN21G3045 Fragaria x ananassa HOM05D000750 ORTHO05D000714 6.7e-41 171.4 162 68.5
FAN25G3451 Fragaria x ananassa HOM05D000750 ORTHO05D000714 6.7e-41 171.4 194 61.9
CsaV3_4G023550 Cucumis sativus L. HOM05D006595 ORTHO05D008238 8.8e-41 171.0 172 65.1
FvH4_3g44681 Fragaria vesca HOM05D006595 ORTHO05D008238 8.8e-41 171.0 188 62.8
Nitab4.5_0005477g0080 Nicotiana tabacum HOM05D006595 ORTHO05D008238 1.1e-40 170.6 193 54.4
RcHm_v2.0_Chr5g0081351 Rosa chinensis HOM05D006595 ORTHO05D008238 1.5e-40 170.2 189 62.4
FAN16G1668 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.0e-40 169.9 162 67.9
EL10Ac4g10339 Beta vulgaris HOM05D006595 ORTHO05D008238 2.6e-40 169.5 191 61.3
Sabra01G0007800 Salix brachista HOM05D006595 ORTHO05D008238 9.7e-40 167.5 213 56.3
AUR62019207 Chenopodium quinoa HOM05D006595 ORTHO05D008238 2.2e-39 166.4 160 67.5
Sed0019652 Sechium edule HOM05D006595 ORTHO05D008238 2.8e-39 166.0 184 63.0
ECA248G3199 Erigeron canadensis HOM05D006595 ORTHO05D008238 4.8e-39 165.2 149 71.8
GSVIVG01025384001 Vitis vinifera HOM05D006595 ORTHO05D008238 4.8e-39 165.2 198 61.1
MELO3C014661.2 Cucumis melo HOM05D006595 ORTHO05D008238 8.2e-39 164.5 170 64.7
THA.LOC104815114 Tarenaya hassleriana HOM05D006595 ORTHO05D008238 8.2e-39 164.5 192 62.5
ClCG02G023820 Citrullus lanatus HOM05D006595 ORTHO05D008238 1.1e-38 164.1 194 59.8
Aqoxy2G00094 Aquilegia oxysepala HOM05D006595 ORTHO05D008238 2.4e-38 162.9 171 62.0
CANSAT11G0726 Cannabis sativa HOM05D006595 ORTHO05D008238 3.1e-38 162.5 197 60.4
Lj5g0010961 Lotus japonicus HOM05D006595 ORTHO05D008238 5.3e-38 161.8 127 78.7
TWI34G0416 Tripterygium wilfordii HOM05D006595 ORTHO05D008238 5.3e-38 161.8 192 59.9
Lj2A705G49 Lonicera japonica HOM05D006595 ORTHO05D008238 9.1e-38 161.0 133 63.9
COL.COLO4_10447 Corchorus olitorius HOM05D006595 ORTHO05D008238 2.0e-37 159.8 194 47.4
Cc01_g00990 Coffea canephora HOM05D006595 ORTHO05D008238 5.9e-37 158.3 196 59.2
PGR102G3301 Punica granatum HOM05D006595 ORTHO05D008238 5.9e-37 158.3 129 77.5
Sc16g0012000 Simmondsia chinensis HOM05D006595 ORTHO05D008238 5.9e-37 158.3 189 63.5
AUR62000037 Chenopodium quinoa HOM05D006595 ORTHO05D008238 2.2e-36 156.4 188 61.2
CDE04G0274 Ceratophyllum demersum HOM05D006595 ORTHO05D008238 3.8e-36 155.6 174 64.9
Phvul.007G006200 Phaseolus vulgaris HOM05D006595 ORTHO05D008238 3.8e-36 155.6 128 76.6
Aa31sc409G10 Aethionema arabicum HOM05D006595 ORTHO05D008238 1.5e-35 153.7 160 65.6
CARHR129020 Cardamine hirsuta HOM05D006595 ORTHO05D008238 1.5e-35 153.7 160 65.0
Thhalv10017283m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 4.2e-35 152.1 174 62.6
Medtr1g116170 Medicago truncatula HOM05D006595 ORTHO05D008238 7.2e-35 151.4 124 79.8
Carub.0004s1654 Capsella rubella HOM05D006595 ORTHO05D008238 9.4e-35 151.0 173 64.2
PSO339G5391 Papaver somniferum HOM05D006595 ORTHO05D008238 1.2e-34 150.6 192 53.1
PSO384G3168 Papaver somniferum HOM05D006595 ORTHO05D008238 1.2e-34 150.6 192 53.6
Cpa.g.sc119.91 Carica papaya HOM05D006595 ORTHO05D008238 2.1e-34 149.8 193 58.5
arahy.Tifrunner.gnm1.ann1.ZL64GD Arachis hypogaea HOM05D006595 ORTHO05D008238 2.7e-34 149.4 178 60.7
Eucgr.B03632 Eucalyptus grandis HOM05D006595 ORTHO05D008238 3.6e-34 149.1 170 62.4
AT2G34860 Arabidopsis thaliana HOM05D006595 ORTHO05D008238 8.0e-34 147.9 167 64.1
BraA05t20025Z Brassica rapa HOM05D006595 ORTHO05D008238 1.0e-33 147.5 161 65.8
Psat6g238960 Pisum sativum HOM05D006595 ORTHO05D008238 1.0e-33 147.5 170 62.4
Sp4g17140 Schrenkiella parvula HOM05D006595 ORTHO05D008238 1.0e-33 147.5 161 64.6
C04p13910 Brassica napus HOM05D006595 ORTHO05D008238 1.8e-33 146.7 182 60.4
BolC4t22980H Brassica oleracea HOM05D006595 ORTHO05D008238 1.8e-33 146.7 182 60.4
BcaC02g11570 Brassica carinata HOM05D006595 ORTHO05D008238 3.0e-33 146.0 182 60.4
TPR.G10430 Trifolium pratense HOM05D006595 ORTHO05D008238 5.2e-33 145.2 128 75.0
A05p10810 Brassica napus HOM05D006595 ORTHO05D008238 6.7e-33 144.8 180 61.7
Thecc.09G215500 Theobroma cacao HOM05D006595 ORTHO05D008238 6.7e-33 144.8 120 58.3
Glyma.10G293900 Glycine max HOM05D006595 ORTHO05D008238 8.8e-33 144.4 164 61.0
Ah.04g161600 Amaranthus hybridus HOM05D000750 ORTHO05D000714 2.0e-32 143.3 145 65.5
Ca_11377_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 2.0e-32 143.3 152 66.4
BraA04t18167Z Brassica rapa HOM05D006595 ORTHO05D008238 2.6e-32 142.9 179 59.8
C04p64040 Brassica napus HOM05D006595 ORTHO05D008238 3.3e-32 142.5 179 59.8
BcaB06g28828 Brassica carinata HOM05D006595 ORTHO05D008238 4.4e-32 142.1 179 60.3
BolC4t27880H Brassica oleracea HOM05D006595 ORTHO05D008238 4.4e-32 142.1 179 59.8
A04p26620 Brassica napus HOM05D006595 ORTHO05D008238 5.7e-32 141.7 179 59.8
BcaC02g07751 Brassica carinata HOM05D006595 ORTHO05D008238 1.7e-31 140.2 179 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 2.2e-31 139.8 146 66.4
HPP92_016182 Vanilla planifolia HOM05D006595 ORTHO05D008238 2.8e-31 139.4 168 61.3
HPP92_026734 Vanilla planifolia HOM05D006595 ORTHO05D008238 2.8e-31 139.4 168 61.9
Lsat_1_v5_gn_1_68280 Lactuca sativa HOM05D006595 ORTHO05D008238 4.8e-31 138.7 149 52.3
Lalb_Chr02g0143771 Lupinus albus HOM05D006595 ORTHO05D008238 6.3e-31 138.3 135 67.4
Os08g0463900 Oryza sativa ssp. japonica HOM05D006595 ORTHO05D008238 1.1e-30 137.5 132 69.7
vmacro04249 Vaccinium macrocarpon HOM05D006595 ORTHO05D008238 1.8e-30 136.7 305 36.1
arahy.Tifrunner.gnm1.ann1.SSSL8J Arachis hypogaea HOM05D006595 ORTHO05D008238 9.1e-30 134.4 185 55.7
ATR1149G131 Amborella trichopoda HOM05D006595 ORTHO05D008238 3.5e-29 132.5 88 93.2
Hund06674 Selenicereus undatus HOM05D006595 ORTHO05D008238 3.5e-29 132.5 125 71.2
HanXRQChr11g0344931 Helianthus annuus HOM05D006595 ORTHO05D008238 1.0e-28 131.0 145 53.1
SEGI_11759 Sequoiadendron giganteum HOM05D006595 ORTHO05D008238 1.3e-28 130.6 142 62.7
unitig_747.g21415 Utricularia gibba HOM05D006595 ORTHO05D008238 1.3e-28 130.6 195 54.4
Glyma.20G243800 Glycine max HOM05D006595 ORTHO05D008238 2.2e-28 129.8 99 80.8
Mapoly0120s0023 Marchantia polymorpha HOM05D006595 ORTHO05D008238 2.5e-27 126.3 125 67.2
Pp3c3_12490 Physcomitrium patens HOM05D006595 ORTHO05D008238 2.0e-24 116.7 154 55.2
QL01p010258 Quercus lobata HOM05D006595 ORTHO05D008238 4.8e-23 112.1 76 71.1
QL08p062509 Quercus lobata HOM05D006595 ORTHO05D008238 4.8e-23 112.1 76 71.1
SMO331G0037 Selaginella moellendorffii HOM05D006595 ORTHO05D008238 6.3e-23 111.7 84 85.7
VMungo0720G3035 Vigna mungo HOM05D006595 ORTHO05D008238 7.0e-22 108.2 117 54.7
MD11G1014500 Malus domestica HOM05D006595 ORTHO05D008238 9.1e-22 107.8 76 68.4
AL4G30870 Arabidopsis lyrata HOM05D006595 ORTHO05D008238 1.2e-21 107.5 167 44.3
CBR_g22940 Chara braunii HOM05D006595 ORTHO05D008238 4.5e-21 105.5 136 53.7
FAN11G2269 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.7e-20 103.6 76 65.8
FAN16G0514 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.6e-20 101.7 74 64.9
FvH4_3g44571 Fragaria vesca HOM05D006595 ORTHO05D008238 4.2e-19 99.0 74 63.5
PRCOL_00006415 Prasinoderma coloniale HOM05D006595 ORTHO05D008238 2.6e-16 89.7 83 71.1
MCO03G122 Micromonas commoda HOM05D006595 ORTHO05D008238 1.1e-14 84.3 128 52.3
Cre11.g475850 Chlamydomonas reinhardtii HOM05D006595 ORTHO05D008238 3.1e-14 82.8 139 38.8
BcaC07g42181 Brassica carinata HOM05D006595 ORTHO05D008238 2.0e-13 80.1 159 40.9
BcaB01g02723 Brassica carinata HOM05D006595 ORTHO05D008238 4.5e-13 79.0 125 44.0
Thhalv10012349m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 1.5e-11 73.9 61 62.3
BcaB06g29011 Brassica carinata HOM05D006595 ORTHO05D008238 1.0e-09 67.8 121 39.7
BcaB01g03109 Brassica carinata HOM05D006595 ORTHO05D008238 6.8e-09 65.1 76 55.3
Pp3c4_29200 Physcomitrium patens HOM05D006595 ORTHO05D008238 4.9e-07 58.9 112 31.2


User provided reference genes

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