Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 2277.3 1129 100.0
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1988.4 1127 87.3
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1984.1 1119 87.8
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1952.2 1125 85.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1874.4 1152 81.2
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1860.9 1127 81.5
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1837.8 1123 80.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1834.7 1128 80.1
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1829.7 1132 79.8
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1824.3 1132 79.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1823.1 1126 79.4
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1822.0 1132 79.9
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1819.7 1130 79.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1816.6 1127 79.3
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1813.5 1126 78.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1812.7 1126 79.8
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1811.6 1128 79.5
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1808.9 1121 78.9
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1136 78.4
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1803.1 1126 78.0
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1798.9 1127 78.8
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1798.9 1128 78.7
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1794.6 1104 79.6
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1794.6 1127 78.5
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1793.9 1131 78.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1793.9 1131 78.0
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1128 78.5
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1790.0 1128 78.4
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1789.2 1126 77.6
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1787.3 1127 78.1
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1128 78.6
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1782.3 1127 78.8
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1780.4 1132 77.7
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1778.1 1127 77.8
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1775.0 1128 78.4
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1774.6 1128 77.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1773.8 1128 78.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1773.1 1126 76.9
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1771.9 1143 76.9
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1767.7 1129 77.4
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1765.0 1167 76.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1762.7 1129 77.6
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1762.7 1202 74.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1761.5 1143 76.6
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1761.1 1126 77.8
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1761.1 1127 77.3
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1760.3 1127 77.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1758.0 1128 77.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1756.9 1127 78.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1753.0 1189 74.3
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1751.5 1126 77.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1751.5 1081 80.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1751.1 1121 77.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1750.3 1127 77.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1747.3 1128 75.9
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1735.7 1126 76.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1732.6 1084 79.8
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1731.8 1128 76.0
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1729.1 1126 75.5
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1729.1 1121 76.3
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1721.8 1121 75.6
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1720.7 1128 74.9
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1719.1 1126 75.8
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1711.4 1126 75.2
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1703.3 1194 72.2
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1127 75.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1691.8 1318 67.1
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1691.4 1136 74.3
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1685.2 1129 74.0
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1685.2 1126 74.5
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1667.9 1079 77.1
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1656.0 1129 73.4
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1654.8 1041 78.3
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1653.6 1129 73.2
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1651.7 1129 73.2
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1651.0 1251 68.6
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1645.2 1154 73.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1638.6 1129 72.8
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1632.8 1131 72.7
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1626.7 1126 72.6
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1625.9 1126 72.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1617.8 1133 71.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1612.0 1126 72.1
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1610.9 1126 72.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1608.6 1127 72.4
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1596.6 1165 70.7
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1548.9 1159 68.3
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1531.2 955 79.5
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1531.2 1128 68.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1520.4 1126 67.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1515.7 1130 67.1
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1512.3 1165 67.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1511.1 1122 68.9
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1437.6 1111 67.3
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1429.8 844 83.1
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1422.1 838 83.2
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1417.9 872 79.5
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1397.5 982 72.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1367.1 866 77.9
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1233.4 1131 58.3
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1216.8 817 72.7
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1191.8 786 73.9
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1161.0 681 83.4
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1122.1 1152 51.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.2e-309 1065.8 1128 50.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 6.5e-301 1037.7 1526 42.1
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.3e-295 1018.1 1154 48.0
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 6.7e-274 948.0 1150 45.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.5e-262 909.1 671 66.2
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.9e-261 906.0 1387 38.2
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 9.8e-257 891.0 528 84.3
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.5e-254 882.1 586 77.0
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 8.9e-250 867.8 678 65.8
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 8.3e-248 861.3 740 59.6
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.6e-222 775.8 454 83.5
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 3.8e-208 729.6 552 67.9
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.3e-195 688.0 439 79.0
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 1.4e-186 657.9 436 72.2
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-178 630.6 593 52.4
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 2.8e-139 500.7 312 78.5
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 7.3e-135 486.1 454 55.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-130 472.2 371 70.4
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 5.1e-120 436.8 334 71.3
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.5e-103 381.3 1101 28.8
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.4e-90 339.0 770 31.7
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 4.9e-83 313.9 1452 22.0
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.3e-79 301.2 307 52.8
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.3e-77 293.9 189 75.1
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.5e-74 285.0 236 66.5
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 5.9e-68 263.8 175 69.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.3e-64 251.9 200 72.5
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.4e-61 242.7 176 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.3e-56 225.3 313 39.0
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.0e-56 224.9 212 56.6
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 5.1e-56 224.2 297 44.4
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.5e-52 211.1 595 31.9
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.3e-46 193.0 172 57.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.7e-46 191.4 213 56.3
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.2e-44 186.4 213 53.5
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.6e-44 186.0 345 40.9
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.2e-43 182.2 113 69.9
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.6e-41 176.0 225 42.7
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.5e-34 152.9 712 23.2
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.9e-34 152.5 183 50.3
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-27 130.2 85 75.3
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.9e-27 128.6 164 48.8
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 5.0e-27 127.9 87 72.4
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.5e-26 126.3 164 47.0
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.9e-26 125.9 85 64.7
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.2e-23 116.7 81 71.6
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.5e-23 116.3 65 83.1
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 4.1e-21 108.2 161 40.4
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.2e-20 106.7 74 71.6
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 9.5e-18 97.1 60 78.3
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 3.6e-17 95.1 67 64.2
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-15 90.1 80 58.8
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 3.4e-15 88.6 95 52.6
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 3.4e-15 88.6 64 67.2
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 2.2e-14 85.9 45 84.4
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 4.9e-14 84.7 84 50.0
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.1e-13 81.6 56 69.6
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 3.0e-11 75.5 58 67.2
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.3e-10 72.0 64 60.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 9.5e-10 70.5 51 58.8
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.8e-09 68.9 80 48.8
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 6.2e-09 67.8 34 79.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.0e-08 65.1 43 65.1
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 8.9e-08 63.9 48 62.5


User provided reference genes

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