Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.2e-85 319.7 149 100.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.0e-53 211.1 166 67.5
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 3.9e-52 208.4 166 66.9
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 3.9e-52 208.4 166 66.9
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.5e-51 205.7 162 67.9
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 4.3e-51 204.9 162 66.7
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 7.3e-51 204.1 162 68.5
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.6e-50 203.0 162 67.3
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 2.1e-50 202.6 162 66.7
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 2.1e-50 202.6 164 65.9
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.8e-50 202.2 164 64.0
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.8e-50 202.2 159 64.2
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 3.6e-50 201.8 164 65.9
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.7e-50 201.4 162 66.0
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.7e-50 201.4 162 66.0
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 4.7e-50 201.4 162 66.0
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 6.2e-50 201.1 162 65.4
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 6.2e-50 201.1 162 67.3
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 6.2e-50 201.1 162 67.9
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.0e-50 200.7 162 66.7
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 8.0e-50 200.7 162 66.0
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.1e-49 200.3 162 66.0
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.1e-49 200.3 162 66.0
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.8e-49 199.5 162 65.4
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 1.8e-49 199.5 162 67.3
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 66.7
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 2.3e-49 199.1 162 65.4
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-49 198.4 159 64.8
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 5.2e-49 198.0 162 66.7
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.0e-48 196.1 160 66.2
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.0e-48 196.1 160 66.2
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.0e-48 196.1 160 66.2
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 4.4e-48 194.9 161 64.0
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 4.4e-48 194.9 165 61.8
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 5.8e-48 194.5 160 63.8
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 9.8e-48 193.7 162 65.4
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.3e-47 193.4 163 64.4
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 3.7e-47 191.8 162 64.8
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-46 190.3 166 62.0
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.9e-46 189.5 159 60.4
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.4e-46 189.1 159 62.3
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.6e-45 186.4 162 61.1
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.7e-45 185.7 159 62.9
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 1.7e-44 183.0 162 61.1
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 1.7e-44 183.0 162 61.1
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 1.7e-44 183.0 162 61.1
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 1.7e-44 183.0 162 61.1
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 1.7e-44 183.0 162 61.1
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.7e-44 183.0 167 60.5
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.3e-44 182.6 160 63.1
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 3.9e-44 181.8 146 63.7
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 5.0e-44 181.4 162 60.5
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 1.1e-43 180.3 162 64.2
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.9e-43 179.5 162 60.5
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 3.3e-43 178.7 166 59.0
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 4.3e-43 178.3 154 64.3
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 5.6e-43 177.9 162 59.9
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 5.2e-41 171.4 157 59.9
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.9e-41 170.6 145 64.8
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.2e-40 170.2 160 55.0
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.6e-40 169.1 147 63.9
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 2.9e-39 165.6 164 56.7
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 2.9e-39 165.6 164 56.7
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 2.9e-39 165.6 164 56.7
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 2.4e-38 162.5 144 58.3
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-38 161.8 152 57.9
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 7.1e-38 161.0 159 55.3
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.3e-36 156.8 142 60.6
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 4.3e-35 151.8 159 55.3
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-34 150.2 142 59.9
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.7e-34 148.3 153 56.2
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 6.2e-34 147.9 155 54.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 8.1e-34 147.5 151 55.0
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 2.4e-33 146.0 149 53.7
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.6e-32 142.5 134 56.7
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.4e-32 142.1 138 58.7
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 6.4e-31 137.9 131 58.8
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.4e-31 137.9 136 61.0
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 8.4e-31 137.5 166 50.6
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.4e-30 136.0 121 60.3
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 3.5e-29 132.1 85 72.9
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 3.5e-29 132.1 85 72.9
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 3.5e-29 132.1 85 72.9
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 7.8e-29 131.0 85 71.8
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.1e-28 128.3 85 70.6
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 5.6e-27 124.8 161 46.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 5.6e-27 124.8 161 46.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 5.6e-27 124.8 161 46.0
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 1.2e-26 123.6 85 69.4
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.8e-26 122.5 135 55.6
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 1.4e-25 120.2 120 59.2
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 4.0e-25 118.6 85 64.7
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 4.0e-25 118.6 85 64.7
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.2e-25 118.2 129 49.6
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 7.6e-24 114.4 137 51.1
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-22 110.5 117 58.1
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 7.1e-22 107.8 85 64.7
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.2e-21 107.1 119 55.5
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.1e-21 106.3 126 49.2
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.0e-20 104.0 95 61.1
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.7e-20 103.2 89 67.4
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.3e-20 102.8 112 51.8
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 3.9e-20 102.1 105 58.1
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 5.1e-20 101.7 55 81.8
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 6.2e-18 94.7 93 59.1
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.8e-17 93.2 89 61.8
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 3.1e-17 92.4 45 95.6
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 3.1e-17 92.4 86 64.0
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.0e-17 92.0 47 87.2
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 5.3e-17 91.7 101 51.5
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 6.9e-17 91.3 87 60.9
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 6.9e-17 91.3 93 51.6
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 6.9e-17 91.3 127 50.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 9.0e-17 90.9 86 62.8
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.5e-16 90.1 45 91.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.6e-16 89.4 86 60.5
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 3.4e-16 89.0 93 57.0
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 5.8e-16 88.2 45 88.9
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.2e-15 86.3 86 57.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 3.8e-15 85.5 43 83.7
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 8.4e-15 84.3 89 56.2
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 8.4e-15 84.3 45 86.7
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.4e-14 83.6 64 62.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 1.4e-14 83.6 45 86.7
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-14 83.6 106 44.3
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 3.2e-14 82.4 93 48.4
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 9.3e-14 80.9 45 84.4
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-13 80.1 45 80.0
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 2.7e-13 79.3 92 53.3
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 6.0e-13 78.2 59 64.4
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.8e-12 76.6 46 78.3
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.8e-12 76.6 46 78.3
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.3e-12 76.3 96 51.0
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 7.4e-11 71.2 60 58.3
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 9.6e-11 70.9 98 49.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 1.2e-08 63.9 39 76.9
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-08 63.9 67 50.7
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.5e-08 63.5 57 54.4
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.5e-08 63.5 55 56.4
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.6e-08 62.8 35 71.4
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.7e-07 60.1 30 90.0


User provided reference genes

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