Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 1.3e-78 296.2 142 100.0
SGA_v2.0_scaffold77G25372 Striga asiatica HOM05D003927 ORTHO05D004905 1.3e-78 296.2 142 100.0
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 1.1e-75 286.6 142 95.1
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 1.4e-75 286.2 142 95.8
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 2.4e-75 285.4 142 95.1
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 2.4e-75 285.4 142 96.5
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.4e-75 285.4 142 96.5
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.4e-75 285.4 142 96.5
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.4e-75 285.4 142 96.5
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 3.1e-75 285.0 142 95.1
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 5.3e-75 284.3 142 94.4
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 5.3e-75 284.3 142 94.4
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 6.9e-75 283.9 142 95.1
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 6.9e-75 283.9 142 95.1
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 6.9e-75 283.9 142 95.1
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 9.0e-75 283.5 142 94.4
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 9.0e-75 283.5 142 94.4
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 9.0e-75 283.5 142 94.4
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 1.5e-74 282.7 142 94.4
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 2.0e-74 282.3 142 93.7
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 2.6e-74 282.0 142 94.4
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 2.6e-74 282.0 142 93.0
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 3.4e-74 281.6 140 94.3
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 3.4e-74 281.6 142 94.4
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 3.4e-74 281.6 142 91.5
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 3.4e-74 281.6 141 93.6
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 3.4e-74 281.6 142 93.0
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 5.8e-74 280.8 142 93.0
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 5.8e-74 280.8 142 93.7
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 7.6e-74 280.4 142 93.0
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 7.6e-74 280.4 136 97.8
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 7.6e-74 280.4 142 93.7
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 9.9e-74 280.0 142 94.4
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 2.2e-73 278.9 140 95.0
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 2.2e-73 278.9 142 93.0
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 2.2e-73 278.9 142 93.7
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 2.9e-73 278.5 142 92.3
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 2.9e-73 278.5 142 93.7
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 3.8e-73 278.1 142 92.3
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 4.9e-73 277.7 142 93.0
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 4.9e-73 277.7 142 92.3
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 4.9e-73 277.7 142 92.3
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 6.4e-73 277.3 142 91.5
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 6.4e-73 277.3 142 93.0
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 8.4e-73 276.9 142 92.3
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 8.4e-73 276.9 142 93.0
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 8.4e-73 276.9 142 89.4
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 91.5
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 92.3
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 93.0
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 90.8
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 90.8
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 90.8
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 1.1e-72 276.6 142 92.3
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 1.4e-72 276.2 142 90.8
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 1.4e-72 276.2 142 93.0
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 1.4e-72 276.2 142 93.0
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 1.4e-72 276.2 142 90.8
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 1.9e-72 275.8 142 92.3
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.9e-72 275.8 142 91.5
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 2.4e-72 275.4 142 92.3
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 2.4e-72 275.4 142 90.8
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 2.4e-72 275.4 142 92.3
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 3.2e-72 275.0 142 91.5
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.2e-72 275.0 142 90.1
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 3.2e-72 275.0 142 90.1
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 4.2e-72 274.6 140 92.1
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 4.2e-72 274.6 142 90.1
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 5.5e-72 274.2 142 90.8
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 9.3e-72 273.5 142 90.1
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 9.3e-72 273.5 142 91.5
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 1.2e-71 273.1 142 90.8
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 2.7e-71 271.9 142 89.4
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 2.7e-71 271.9 142 89.4
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.7e-71 271.9 142 89.4
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 2.7e-71 271.9 142 88.0
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 3.5e-71 271.6 142 90.1
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 4.6e-71 271.2 142 90.1
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 7.9e-71 270.4 142 88.7
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 7.9e-71 270.4 142 88.7
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 7.9e-71 270.4 142 88.7
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 1.3e-70 269.6 142 88.7
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 1.3e-70 269.6 142 88.7
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 1.3e-70 269.6 142 90.1
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.3e-70 269.6 142 88.7
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 3.0e-70 268.5 142 88.0
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 3.9e-70 268.1 142 88.0
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 3.9e-70 268.1 142 88.0
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 3.9e-70 268.1 142 88.0
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 5.1e-70 267.7 142 88.7
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 5.1e-70 267.7 142 88.7
TAR626G0108 Trochodendron aralioides HOM05D003927 ORTHO05D004905 5.1e-70 267.7 142 90.1
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.0
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.7
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.7
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.7
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.7
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.7
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 1.5e-69 266.2 142 88.0
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 2.5e-69 265.4 139 90.6
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 3.3e-69 265.0 142 87.3
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 7.4e-69 263.8 142 85.9
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 7.4e-69 263.8 142 88.0
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 9.6e-69 263.5 142 86.6
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 9.6e-69 263.5 142 86.6
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 9.6e-69 263.5 142 86.6
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 9.6e-69 263.5 142 86.6
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 2.1e-68 262.3 143 88.8
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 2.1e-68 262.3 142 85.9
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 2.8e-68 261.9 142 86.6
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 2.8e-68 261.9 136 91.2
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 4.8e-68 261.2 142 85.9
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 4.8e-68 261.2 142 85.9
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 4.8e-68 261.2 143 88.1
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 2.4e-67 258.8 142 85.9
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 5.3e-67 257.7 142 85.2
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 5.3e-67 257.7 142 85.9
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 9.0e-67 256.9 142 85.2
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 2.0e-66 255.8 142 84.5
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 2.0e-66 255.8 142 84.5
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 1.7e-65 252.7 125 95.2
HanXRQChr15g0483471 Helianthus annuus HOM05D003927 ORTHO05D004905 3.8e-65 251.5 160 79.4
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.6e-63 246.1 132 89.4
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 2.7e-63 245.4 170 72.9
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 3.0e-62 241.9 128 89.1
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 1.1e-56 223.4 142 76.8
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 4.2e-56 221.5 106 100.0
Dinv29313 Davidia involucrata HOM05D003927 ORTHO05D004905 5.5e-56 221.1 109 95.4
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 7.2e-56 220.7 112 92.9
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 2.5e-53 212.2 110 91.8
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 4.3e-53 211.5 110 91.8
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 7.4e-53 210.7 139 71.9
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.6e-52 209.5 113 89.4
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.2e-50 203.4 109 89.9
HPP92_026366 Vanilla planifolia HOM05D003927 ORTHO05D004905 2.2e-49 199.1 108 85.2
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 4.6e-47 191.4 132 72.7
SEGI_30940 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.0e-46 190.3 111 78.4
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 7.4e-45 184.1 113 75.2
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 9.7e-45 183.7 98 88.8
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 5.3e-43 177.9 87 95.4
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 1.0e-41 173.7 84 95.2
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 7.5e-29 131.0 141 47.5
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 1.2e-26 123.6 138 51.4
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 2.1e-23 112.8 96 59.4
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 1.4e-22 110.2 135 43.7
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 2.6e-21 105.9 58 86.2
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 4.4e-21 105.1 52 94.2
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 5.4e-19 98.2 149 39.6
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 4.2e-16 88.6 148 35.8
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 3.7e-12 75.5 42 88.1
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 1.4e-11 73.6 59 57.6
Zm00001eb188860 Zea mays HOM05D003927 ORTHO05D004905 1.8e-11 73.2 40 82.5
Zm00001eb085490 Zea mays HOM05D003927 ORTHO05D004905 2.4e-11 72.8 40 82.5
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 7.0e-11 71.2 111 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 3.8e-09 65.5 101 42.6
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 4.7e-07 58.5 105 40.0
Zm00001eb010380 Zea mays HOM05D003927 ORTHO05D004905 1.0e-06 57.4 30 86.7


User provided reference genes

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