Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 4.9e-118 427.9 235 100.0
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 3.8e-78 295.4 215 71.2
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.9e-77 293.1 217 70.5
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.1e-73 279.6 219 74.4
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 3.7e-73 278.9 216 67.1
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.1e-69 267.3 208 67.3
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 7.2e-69 264.6 218 65.6
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.6e-68 263.5 216 66.2
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 6.7e-67 258.1 224 62.5
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 2.5e-66 256.1 216 62.5
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 9.7e-66 254.2 216 62.0
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 6.3e-65 251.5 166 76.5
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 6.3e-65 251.5 166 76.5
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 6.3e-65 251.5 214 62.1
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 8.2e-65 251.1 220 64.1
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.1e-64 250.8 164 75.6
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.8e-64 250.0 213 67.6
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 2.4e-64 249.6 216 61.1
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.1e-64 249.2 164 75.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 9.0e-64 247.7 160 75.6
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.5e-63 246.9 226 61.1
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.5e-63 246.9 221 60.6
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 2.0e-63 246.5 166 70.5
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 3.4e-63 245.7 172 71.5
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 3.4e-63 245.7 172 71.5
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 7.7e-63 244.6 161 73.9
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.3e-62 243.8 169 72.2
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 1.3e-62 243.8 160 75.0
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.1e-61 240.7 158 74.1
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 1.4e-61 240.4 133 84.2
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.9e-61 240.0 171 70.8
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.5e-61 239.6 202 60.9
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 3.2e-61 239.2 133 84.2
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.2e-61 239.2 170 70.6
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 4.2e-61 238.8 174 69.0
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 5.5e-61 238.4 170 70.0
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 7.2e-61 238.0 170 70.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 7.2e-61 238.0 163 73.0
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 7.2e-61 238.0 211 61.1
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 9.4e-61 237.7 165 71.5
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 9.4e-61 237.7 175 68.6
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 9.4e-61 237.7 219 58.0
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.2e-60 237.3 165 71.5
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.2e-60 237.3 165 71.5
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 1.2e-60 237.3 166 70.5
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 2.1e-60 236.5 169 69.8
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.1e-60 236.5 128 85.9
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 2.7e-60 236.1 202 61.4
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 4.6e-60 235.3 176 67.6
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 6.1e-60 235.0 158 72.8
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 6.1e-60 235.0 129 86.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 7.9e-60 234.6 150 76.0
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.0e-59 234.2 160 72.5
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.4e-59 233.8 172 68.0
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.4e-59 233.8 163 72.4
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 1.8e-59 233.4 161 72.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.8e-59 233.4 158 72.8
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 3.9e-59 232.3 131 83.2
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-59 232.3 228 61.0
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 6.7e-59 231.5 166 70.5
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 8.8e-59 231.1 175 69.1
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 8.8e-59 231.1 174 69.0
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 8.8e-59 231.1 160 70.6
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.1e-58 230.7 130 83.1
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.1e-58 230.7 176 66.5
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.1e-58 230.7 162 71.6
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 2.0e-58 229.9 155 72.9
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.3e-58 229.2 128 83.6
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 3.3e-58 229.2 176 65.3
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 4.3e-58 228.8 162 70.4
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 5.7e-58 228.4 180 66.7
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 7.4e-58 228.0 160 70.0
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 9.7e-58 227.6 169 68.0
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 9.7e-58 227.6 176 65.3
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 9.7e-58 227.6 176 65.3
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.3e-57 227.3 165 68.5
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 2.2e-57 226.5 163 70.6
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 6.3e-57 224.9 182 61.5
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 6.3e-57 224.9 165 69.1
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 8.2e-57 224.6 129 82.2
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.8e-56 223.4 133 80.5
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.3e-56 221.9 133 78.9
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 5.3e-56 221.9 182 61.0
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 6.9e-56 221.5 130 78.5
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 6.9e-56 221.5 160 67.5
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 9.1e-56 221.1 128 80.5
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 3.4e-55 219.2 195 59.0
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.4e-55 219.2 167 65.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 4.5e-55 218.8 167 65.9
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 7.7e-55 218.0 187 60.4
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 2.2e-54 216.5 169 66.3
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 2.9e-54 216.1 128 79.7
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 3.8e-54 215.7 128 79.7
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 3.8e-54 215.7 161 66.5
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 6.5e-54 214.9 128 78.1
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 6.5e-54 214.9 128 78.1
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 8.5e-54 214.5 187 57.8
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 2.5e-53 213.0 133 75.2
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 7.2e-53 211.5 123 78.9
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 9.4e-53 211.1 161 64.6
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.2e-52 210.7 128 77.3
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-52 210.7 128 77.3
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 1.2e-52 210.7 128 77.3
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 2.1e-52 209.9 133 75.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 2.7e-52 209.5 128 76.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 3.6e-52 209.1 177 66.1
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.6e-52 209.1 128 76.6
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 4.7e-52 208.8 164 63.4
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 4.7e-52 208.8 126 78.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.3e-51 206.5 130 75.4
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 3.9e-51 205.7 126 76.2
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 3.9e-51 205.7 126 76.2
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 8.8e-51 204.5 121 79.3
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.6e-50 203.0 130 71.5
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 2.2e-49 199.9 166 61.4
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.4e-48 197.2 127 71.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.7e-43 178.3 130 63.8
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.3e-40 168.7 130 60.8
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.3e-40 168.7 127 59.8
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.3e-40 168.7 127 59.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 5.7e-34 148.7 114 70.2
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 2.0e-31 140.2 139 56.1
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 5.0e-30 135.6 123 58.5
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 6.5e-30 135.2 73 87.7
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.6e-28 130.6 118 58.5
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 6.3e-25 118.6 205 37.6
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 3.8e-22 109.4 120 46.7
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 7.3e-21 105.1 196 38.3
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 3.6e-20 102.8 141 41.1
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 4.7e-20 102.4 56 82.1
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 5.2e-19 99.0 49 93.9
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.2e-18 97.8 87 59.8
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 5.7e-18 95.5 54 79.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 6.6e-14 82.0 69 63.8
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.0e-11 74.7 100 43.0
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.3e-09 67.8 46 65.2
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 2.9e-09 66.6 44 70.5
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 6.4e-09 65.5 33 87.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 7.0e-08 62.0 74 50.0


User provided reference genes

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