Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.7e-118 428.7 220 100.0
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.2e-73 280.4 219 74.4
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 4.2e-63 245.4 222 63.1
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 5.5e-63 245.0 221 62.9
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 7.7e-57 224.6 223 57.8
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.6e-54 215.7 228 56.6
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.3e-53 213.0 212 58.5
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 2.3e-53 213.0 218 56.4
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 3.9e-53 212.2 219 56.2
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.5e-52 210.3 219 56.2
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.2e-51 206.5 225 55.1
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 4.8e-51 205.3 165 65.5
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 1.4e-50 203.8 140 72.9
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 2.4e-50 203.0 141 72.3
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 4.1e-50 202.2 140 72.1
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 4.1e-50 202.2 146 69.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 4.1e-50 202.2 143 74.1
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 5.3e-50 201.8 141 70.9
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 7.0e-50 201.4 145 71.0
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 7.0e-50 201.4 141 71.6
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 9.1e-50 201.1 219 52.5
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 9.1e-50 201.1 219 52.5
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 1.6e-49 200.3 138 73.2
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.6e-49 200.3 144 72.9
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 2.0e-49 199.9 136 73.5
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 2.6e-49 199.5 155 65.2
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 2.6e-49 199.5 133 75.9
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.5e-49 199.1 134 75.4
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 4.5e-49 198.7 138 73.2
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 5.9e-49 198.4 138 73.2
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 7.7e-49 198.0 158 68.4
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 1.3e-48 197.2 213 54.5
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 1.7e-48 196.8 136 72.8
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.7e-48 196.8 136 72.8
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 1.7e-48 196.8 144 70.8
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.2e-48 196.4 135 72.6
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.2e-48 196.4 135 72.6
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 3.8e-48 195.7 136 72.8
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 3.8e-48 195.7 136 72.8
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 5.0e-48 195.3 138 71.7
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 5.0e-48 195.3 229 52.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.0e-48 195.3 144 70.1
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 5.0e-48 195.3 217 51.6
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 6.5e-48 194.9 138 70.3
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 6.5e-48 194.9 135 72.6
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 6.5e-48 194.9 162 63.6
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 8.5e-48 194.5 144 70.1
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.1e-47 194.1 144 70.1
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 1.5e-47 193.7 154 65.6
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.5e-47 193.7 144 70.8
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.5e-47 193.7 149 65.8
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.5e-47 193.7 139 70.5
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 3.2e-47 192.6 140 70.7
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.2e-47 192.2 226 52.2
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 5.5e-47 191.8 138 70.3
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 9.4e-47 191.0 140 69.3
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 9.4e-47 191.0 143 69.9
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 9.4e-47 191.0 160 63.1
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 2.1e-46 189.9 149 66.4
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.1e-46 189.9 134 72.4
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 2.1e-46 189.9 142 67.6
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 2.7e-46 189.5 149 66.4
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 2.7e-46 189.5 149 66.4
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 6.1e-46 188.3 159 62.9
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 6.1e-46 188.3 218 50.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 8.0e-46 188.0 136 69.9
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 8.0e-46 188.0 135 68.9
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.4e-45 187.2 154 63.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.4e-45 187.2 148 66.2
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.8e-45 186.8 168 59.5
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 2.3e-45 186.4 132 72.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 2.3e-45 186.4 136 69.1
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 2.3e-45 186.4 140 68.6
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 3.0e-45 186.0 164 61.0
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 8.8e-45 184.5 139 66.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 8.8e-45 184.5 144 65.3
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 2.0e-44 183.3 149 63.1
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 2.6e-44 183.0 140 67.9
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.3e-44 182.6 172 58.1
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 5.7e-44 181.8 138 66.7
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 7.5e-44 181.4 132 70.5
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 7.5e-44 181.4 177 57.1
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.7e-43 180.3 138 66.7
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.7e-43 180.3 138 66.7
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.2e-43 179.9 142 64.8
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 2.2e-43 179.9 172 57.6
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 2.2e-43 179.9 147 63.3
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 2.2e-43 179.9 144 63.9
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 2.8e-43 179.5 183 55.7
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 2.8e-43 179.5 183 55.7
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 2.8e-43 179.5 183 55.7
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 6.3e-43 178.3 140 67.1
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 6.3e-43 178.3 127 68.5
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 8.2e-43 177.9 132 67.4
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.4e-42 177.2 149 61.7
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.8e-42 176.8 149 61.1
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.8e-42 176.8 139 64.7
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 3.1e-42 176.0 149 61.1
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 5.3e-42 175.3 133 67.7
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 9.1e-42 174.5 183 54.1
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.6e-41 173.7 146 61.6
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.6e-41 173.7 146 61.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 2.0e-41 173.3 117 77.8
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.7e-41 172.9 144 61.8
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 4.5e-41 172.2 144 61.8
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.9e-41 171.8 218 47.7
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 7.7e-41 171.4 129 68.2
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.0e-40 171.0 139 63.3
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.7e-40 170.2 144 66.7
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 5.0e-40 168.7 130 66.2
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.1e-39 167.5 136 61.8
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.9e-39 166.8 130 64.6
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.9e-39 166.8 130 64.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 4.2e-39 165.6 152 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.6e-38 163.7 130 63.8
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 5.2e-37 158.7 134 60.4
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.9e-33 145.2 164 50.0
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.9e-31 140.2 183 48.1
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.9e-31 140.2 161 47.2
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.9e-31 140.2 161 47.2
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 4.4e-28 129.0 99 70.7
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 4.5e-25 119.0 122 53.3
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 5.0e-24 115.5 69 81.2
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 5.0e-24 115.5 69 81.2
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 6.1e-22 108.6 69 75.4
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 2.0e-17 93.6 59 72.9
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 5.9e-17 92.0 132 43.9
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 8.6e-16 88.2 54 77.8
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 4.3e-15 85.9 61 70.5
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 2.1e-14 83.6 52 78.8
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 2.1e-14 83.6 57 70.2
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 4.0e-13 79.3 124 39.5
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 2.0e-12 77.0 142 35.9
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.4e-10 70.1 46 76.1
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 4.1e-10 69.3 104 40.4
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.2e-09 67.8 56 60.7
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 8.6e-08 61.6 39 69.2


User provided reference genes

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