Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.5e-145 517.3 286 100.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 5.6e-100 368.2 296 75.7
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-95 354.0 302 70.9
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 4.1e-95 352.1 294 71.8
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 8.6e-93 344.4 296 70.6
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.2e-91 338.2 305 64.3
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 6.8e-90 334.7 307 67.4
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.5e-89 333.6 292 68.5
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.6e-89 332.8 284 70.8
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.6e-89 332.8 286 69.9
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.6e-89 331.3 303 66.7
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 8.4e-88 327.8 299 67.9
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-87 327.0 300 67.0
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.2e-87 325.9 279 69.9
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.7e-86 322.8 301 64.1
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 3.5e-86 322.4 314 60.5
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.0e-86 321.6 297 62.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.3e-85 320.5 297 62.6
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.7e-85 320.1 293 63.1
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.9e-85 318.9 295 63.1
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 6.6e-85 318.2 279 63.8
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 6.6e-85 318.2 285 66.7
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.1e-84 317.4 295 67.5
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 2.5e-84 316.2 302 65.6
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 3.3e-84 315.8 291 64.9
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.6e-83 313.5 294 69.4
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.6e-83 313.5 283 66.1
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.6e-83 313.5 290 66.6
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.1e-83 313.2 298 61.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.8e-83 312.0 302 65.2
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 6.2e-83 311.6 294 67.0
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.2e-83 311.6 272 68.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.0e-82 308.9 288 64.6
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 4.0e-82 308.9 289 62.3
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.3e-82 308.5 305 63.9
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.0e-82 307.8 297 68.4
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 9.0e-82 307.8 295 62.7
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 9.0e-82 307.8 295 62.7
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.4e-81 305.4 300 64.7
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 9.9e-81 304.3 294 64.6
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.7e-80 303.5 219 79.5
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.2e-80 303.1 314 62.4
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-80 302.4 315 64.1
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.9e-80 302.0 305 63.3
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.9e-79 300.1 296 59.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.9e-79 300.1 284 62.0
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 5.4e-79 298.5 314 61.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 5.4e-79 298.5 286 60.1
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 9.3e-79 297.7 294 65.0
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.3e-79 297.7 306 64.7
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.6e-78 297.0 277 66.1
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 2.1e-78 296.6 293 62.1
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 3.5e-78 295.8 323 58.5
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.6e-78 295.4 307 59.0
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 6.0e-78 295.0 296 63.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 7.9e-78 294.7 302 60.9
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-77 293.9 290 65.2
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.1e-76 290.8 304 61.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.5e-76 290.4 295 63.7
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.5e-76 289.7 294 61.9
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 3.3e-76 289.3 301 62.5
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 4.3e-76 288.9 305 63.9
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 5.6e-76 288.5 328 57.0
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.6e-76 288.5 281 64.1
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 7.4e-76 288.1 285 63.9
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 9.6e-76 287.7 297 63.0
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.1e-75 286.6 306 64.1
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.8e-75 286.2 289 62.3
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 4.8e-75 285.4 296 63.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.8e-75 285.4 303 58.7
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 6.2e-75 285.0 316 58.9
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 8.1e-75 284.6 301 65.8
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.1e-74 284.3 300 61.7
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-74 283.9 297 61.6
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 3.1e-74 282.7 297 57.9
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 5.3e-74 282.0 290 59.0
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 6.9e-74 281.6 297 62.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 6.9e-74 281.6 297 62.6
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 6.9e-74 281.6 280 58.9
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.6e-73 279.6 290 60.0
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.6e-73 279.6 290 60.0
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.4e-73 279.3 302 59.6
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 5.8e-73 278.5 303 62.7
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 9.9e-73 277.7 313 58.5
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.7e-72 276.9 283 65.7
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 2.9e-72 276.2 313 58.1
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.9e-72 275.4 302 61.9
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 8.4e-72 274.6 297 61.6
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 4.2e-71 272.3 279 64.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 4.2e-71 272.3 279 64.5
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 5.5e-71 271.9 314 62.4
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.1e-70 270.0 305 62.0
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.7e-70 269.6 304 57.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.6e-70 268.9 305 58.0
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 5.1e-69 265.4 291 60.1
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 5.1e-69 265.4 287 62.0
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.1e-68 264.2 309 57.6
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 2.5e-68 263.1 288 60.8
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 4.3e-68 262.3 286 61.2
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 9.6e-68 261.2 278 56.8
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 9.6e-68 261.2 292 61.6
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.3e-67 260.8 297 58.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.6e-67 260.4 278 63.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.8e-67 259.6 300 58.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.8e-67 259.6 285 58.6
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 3.7e-67 259.2 281 61.9
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 8.1e-67 258.1 302 58.9
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.1e-66 257.7 303 57.4
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 5.3e-66 255.4 286 59.8
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 9.0e-66 254.6 290 61.0
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.0e-65 253.4 304 57.9
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 5.8e-65 251.9 297 58.2
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 5.8e-65 251.9 277 58.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 7.6e-65 251.5 318 56.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 7.6e-65 251.5 351 51.0
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.0e-64 251.1 305 57.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.3e-64 250.8 325 56.9
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.7e-64 250.4 292 58.9
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 3.8e-64 249.2 318 54.1
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.4e-63 247.3 391 47.8
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-63 247.3 240 62.9
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.5e-63 246.5 305 57.7
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 4.6e-62 242.3 319 52.0
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.3e-61 240.0 291 57.7
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.1e-60 237.7 287 59.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 4.3e-60 235.7 290 56.2
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.6e-60 234.6 203 69.5
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.4e-58 229.9 312 52.9
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.4e-58 229.9 286 54.9
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.9e-58 228.4 295 53.9
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 9.0e-58 228.0 311 52.7
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 9.0e-58 228.0 308 56.5
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.2e-57 227.6 279 54.8
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.2e-57 227.6 291 52.9
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 5.0e-56 222.2 297 53.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.9e-55 220.3 296 50.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 5.5e-55 218.8 286 53.1
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.3e-55 218.0 308 50.0
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 2.3e-53 213.4 206 71.4
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 3.0e-53 213.0 282 54.6
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 9.7e-52 208.0 202 66.8
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 4.8e-51 205.7 306 53.6
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.5e-48 195.3 214 62.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.2e-47 191.8 286 47.6
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 7.2e-47 191.8 292 49.7
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.7e-46 189.9 263 52.1
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.1e-44 184.5 208 60.1
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.7e-43 180.6 173 70.5
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 3.7e-43 179.5 236 57.6
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.8e-42 177.2 202 59.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.1e-39 167.9 242 53.3
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.3e-37 160.2 139 61.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 3.9e-37 159.5 299 45.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.1e-34 151.4 294 43.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 6.5e-32 142.1 98 73.5
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.4e-29 134.4 324 38.9
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 3.0e-29 133.3 81 81.5
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.0e-29 132.9 88 73.9
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 4.0e-29 132.9 322 39.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.5e-28 131.0 99 67.7
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 2.2e-27 127.1 328 41.2
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.7e-27 126.3 205 48.3
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.1e-26 124.8 121 57.0
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 7.7e-25 118.6 201 50.7
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.6e-22 110.9 87 64.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.8e-21 105.5 196 41.8
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.7e-20 102.4 68 70.6
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.4e-18 97.8 81 67.9
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.4e-18 97.1 87 52.9
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.1e-18 96.3 63 71.4
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 7.0e-18 95.5 77 67.5
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.0e-17 94.0 108 52.8
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.6e-14 84.3 64 60.9
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 3.6e-14 83.2 307 36.8
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 6.1e-14 82.4 72 66.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.9e-11 72.8 45 80.0
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.3e-11 72.0 102 49.0
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.8e-10 70.9 115 44.3
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.6e-09 67.8 78 51.3
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 4.5e-09 66.2 270 39.3
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 5.0e-08 62.8 80 51.2
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 2.5e-07 60.5 104 56.7
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 9.5e-07 58.5 79 44.3
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 3.6e-06 56.6 75 49.3
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.7e-06 56.2 105 45.7


User provided reference genes

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