Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold77G25274 Striga asiatica HOM05D008810 ORTHO05D010971 7.4e-148 528.5 255 100.0
MSTRG.12764 Avicennia marina HOM05D008810 ORTHO05D010971 4.4e-84 316.6 296 53.0
Migut.N00641 Erythranthe guttata HOM05D008810 ORTHO05D010971 1.7e-83 314.7 294 54.1
Lsat_1_v5_gn_9_17361 Lactuca sativa HOM05D008810 ORTHO05D010971 1.3e-59 235.3 258 44.2
THA.LOC104802656 Tarenaya hassleriana HOM05D008810 ORTHO05D010971 2.4e-58 231.1 263 44.9
Ciclev10018778m.g Citrus clementina HOM05D008810 ORTHO05D010971 5.4e-58 229.9 296 44.6
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 9.3e-58 229.2 254 46.1
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 2.5e-55 221.1 264 43.9
Duzib138G0800 Durio zibethinus HOM05D008810 ORTHO05D010971 2.1e-54 218.0 264 43.9
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 3.6e-54 217.2 264 43.2
Thecc.01G216300 Theobroma cacao HOM05D008810 ORTHO05D010971 8.1e-54 216.1 258 44.2
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 1.2e-52 212.2 255 43.1
AL3G18590 Arabidopsis lyrata HOM05D008810 ORTHO05D010971 1.5e-52 211.8 289 39.8
AT3G07290 Arabidopsis thaliana HOM05D008810 ORTHO05D010971 3.4e-52 210.7 252 43.7
Sp3g06240 Schrenkiella parvula HOM05D008810 ORTHO05D010971 9.9e-52 209.1 250 42.0
Cpa.g.sc8.119 Carica papaya HOM05D008810 ORTHO05D010971 1.7e-51 208.4 255 43.5
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 1.7e-51 208.4 262 42.0
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 3.8e-51 207.2 266 44.7
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 6.4e-51 206.5 258 43.0
CARHR081940 Cardamine hirsuta HOM05D008810 ORTHO05D010971 4.2e-50 203.8 257 40.9
Rhsim13G0050100 Rhododendron simsii HOM05D008810 ORTHO05D010971 3.5e-49 200.7 260 44.2
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 1.8e-48 198.4 292 39.0
BraA01t04388Z Brassica rapa HOM05D008810 ORTHO05D010971 3.9e-48 197.2 269 38.3
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 7.4e-47 193.0 222 43.2
BNapus_Darmor_BZH_scaffold_109p00140 Brassica napus HOM05D008810 ORTHO05D010971 2.1e-46 191.4 262 37.0
BcaB04g21297 Brassica carinata HOM05D008810 ORTHO05D010971 1.8e-45 188.3 252 38.9
Aa31LG5G17860 Aethionema arabicum HOM05D008810 ORTHO05D010971 2.0e-44 184.9 270 38.5
BolC1t05560H Brassica oleracea HOM05D008810 ORTHO05D010971 3.2e-42 177.6 248 37.5
HanXRQChr08g0232341 Helianthus annuus HOM05D008810 ORTHO05D010971 3.5e-41 174.1 225 43.1
Carub.0003s0683 Capsella rubella HOM05D008810 ORTHO05D010971 1.5e-39 168.7 193 44.0
Aqoxy2G03931 Aquilegia oxysepala HOM05D008810 ORTHO05D010971 6.2e-38 163.3 201 44.3
MBI11_g07406_MAGBIO Magnolia biondii HOM05D008810 ORTHO05D010971 4.5e-36 157.1 159 49.7
ATR0661G545 Amborella trichopoda HOM05D008810 ORTHO05D010971 3.1e-29 134.4 223 35.9
CSS0037385 Camellia sinensis var. sinensis HOM05D008810 ORTHO05D010971 1.3e-14 85.9 153 36.6
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 8.2e-14 83.2 186 26.3
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.4e-13 81.6 139 30.9
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.3e-13 80.5 288 23.3
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 3.5e-12 77.8 240 25.8
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 7.7e-12 76.6 152 30.3
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 1.0e-11 76.3 285 24.2
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 1.7e-11 75.5 154 30.5
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 1.4e-10 72.4 264 24.6
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.9e-10 72.0 188 25.5
Actinidia23380 Actinidia chinensis HOM05D008810 ORTHO05D010971 2.5e-10 71.6 52 61.5
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 4.2e-10 70.9 243 24.7
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 5.5e-10 70.5 147 27.2
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.5e-10 70.5 213 22.1
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 9.4e-10 69.7 147 28.6
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 2.7e-09 68.2 241 25.7
CsaV3_2G034000 Cucumis sativus L. HOM05D007157 ORTHO05D009045 6.1e-09 67.0 234 26.1
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 1.0e-08 66.2 192 24.5
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 1.8e-08 65.5 202 25.2
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.3e-08 65.1 203 24.1
Sed0017582 Sechium edule HOM05D007157 ORTHO05D009045 1.1e-07 62.8 227 25.6
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 1.5e-07 62.4 239 23.8
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 2.6e-07 61.6 232 21.1
Lalb_Chr09g0320101 Lupinus albus HOM05D007128 ORTHO05D009059 2.6e-07 61.6 213 24.9
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 5.7e-07 60.5 168 26.8
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 5.7e-07 60.5 132 28.8
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 5.7e-07 60.5 132 28.8
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 1.3e-06 59.3 133 25.6
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.7e-06 58.9 236 22.9
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.7e-06 58.9 135 31.1
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 2.2e-06 58.5 248 24.2
Dinv28839 Davidia involucrata HOM05D008810 ORTHO05D010971 6.3e-06 57.0 32 71.9


User provided reference genes

Program Settings