Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 2600.5 1291 100.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 2077.4 1316 79.6
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 2044.2 1316 77.7
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1324 73.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1324 73.0
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1885.2 1318 72.2
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1317 71.5
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1867.8 1325 71.2
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1863.2 1319 71.1
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1845.1 1326 70.3
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1841.6 1317 70.6
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1835.5 1320 70.8
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1833.5 1322 69.6
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1833.2 1317 70.0
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1825.1 1333 69.2
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1823.9 1333 69.5
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1820.1 1326 69.4
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1817.4 1326 69.6
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1816.2 1325 69.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1814.3 1326 69.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1813.9 1327 69.7
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1812.0 1324 69.0
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1809.7 1314 70.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1806.2 1309 69.0
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1798.5 1322 68.2
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1795.4 1326 68.4
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1795.0 1348 68.1
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1794.6 1322 68.2
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1792.3 1308 69.3
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1790.0 1322 68.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1787.3 1329 68.2
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1787.3 1326 68.5
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1787.3 1328 67.8
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1786.2 1338 67.7
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1783.8 1328 67.6
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1782.7 1322 68.5
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1781.9 1322 67.9
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1780.8 1323 68.6
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1778.8 1322 68.3
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1778.1 1322 68.2
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1776.5 1322 68.2
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1774.2 1322 68.4
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1773.1 1324 68.1
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1772.3 1357 66.3
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1771.9 1328 67.6
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1771.9 1319 68.1
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1771.1 1323 67.5
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1770.4 1328 67.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1769.6 1322 66.9
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1767.7 1322 66.9
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1760.7 1366 66.1
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1759.2 1326 67.7
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1758.0 1323 68.0
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1756.9 1293 68.7
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1755.3 1325 67.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1755.3 1329 67.3
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1755.0 1324 67.7
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1755.0 1313 67.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1753.4 1303 69.3
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1752.6 1325 67.3
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1749.6 1325 67.2
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1747.6 1307 67.6
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1746.9 1324 66.7
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1744.2 1326 66.7
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1743.0 1326 66.6
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1743.0 1333 67.5
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1741.5 1323 66.3
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1740.3 1327 66.5
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1740.3 1322 67.3
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1738.8 1332 66.4
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1738.4 1327 66.5
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1731.8 1325 66.9
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1731.1 1322 66.8
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1729.5 1325 66.8
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1728.4 1325 66.6
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1727.2 1326 66.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1725.7 1326 66.7
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1725.3 1390 64.2
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1721.8 1329 66.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1718.4 1338 65.6
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1712.6 1323 65.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1704.1 1316 66.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1703.7 1584 58.2
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1699.9 1314 65.9
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1696.8 1349 64.6
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1691.4 1335 64.5
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1691.0 1299 66.2
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1671.8 1322 65.4
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1664.4 1310 64.7
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1630.5 1231 67.3
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1629.4 1153 71.9
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1605.9 1320 61.6
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1597.0 1229 66.2
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1573.5 1102 72.3
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1547.3 1310 60.3
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1542.3 1279 61.2
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1486.9 1038 71.7
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1460.3 1149 66.3
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1453.7 1137 64.9
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1441.0 1054 69.3
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1400.6 1036 68.4
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1367.8 1127 62.4
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1314.3 927 72.5
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1312.7 1316 56.3
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1286.2 1018 64.1
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1279.2 919 70.2
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1225.7 1455 47.1
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1106.7 1429 44.3
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 1.4e-299 1033.5 809 64.5
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.7e-292 1010.0 866 61.0
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 3.8e-289 998.8 776 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.8e-270 936.8 1215 43.5
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 3.2e-264 916.0 1008 50.0
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.7e-244 850.5 655 67.5
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.6e-232 808.9 599 68.1
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 4.9e-228 795.8 890 50.3
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 5.1e-193 679.5 509 67.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 4.1e-190 669.8 1435 32.8
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.8e-174 617.8 457 69.4
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.1e-146 524.6 476 56.3
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.2e-138 498.8 369 67.2
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 5.4e-110 403.7 384 54.2
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 5.1e-100 370.5 202 86.1
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.2e-87 328.6 316 55.7
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.9e-86 325.5 435 42.1
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.0e-84 319.7 194 76.8
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 2.4e-81 308.5 172 86.6
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 4.5e-80 304.3 255 60.4
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 2.4e-73 282.0 159 84.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.7e-71 275.8 203 70.0
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-68 266.5 199 68.8
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 9.1e-65 253.4 267 49.8
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.1e-61 242.3 180 67.2
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 6.1e-61 240.7 157 75.8
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-60 239.6 261 50.6
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-60 239.6 261 50.6
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-60 239.6 261 50.6
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 6.7e-60 237.3 215 58.1
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.4e-57 229.6 182 63.2
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.3e-57 227.6 434 35.0
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.2e-54 218.0 144 73.6
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.9e-47 195.3 139 69.1
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.4e-44 186.4 137 60.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 6.3e-42 177.6 131 64.1
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.4e-41 176.4 109 74.3
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 7.0e-41 174.1 158 60.1
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.2e-40 173.3 109 74.3
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.0e-40 172.6 163 54.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-39 167.9 121 73.6
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.0e-39 167.9 109 72.5
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.0e-39 167.9 109 72.5
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.4e-38 163.7 109 71.6
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.2e-36 157.9 98 74.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 7.5e-35 154.1 116 64.7
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 3.7e-34 151.8 102 71.6
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-33 149.1 98 76.5
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.3e-31 142.5 82 76.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.0e-28 133.7 87 67.8
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.0e-27 129.4 124 54.8
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 7.0e-25 120.9 67 77.6
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.7e-23 116.3 119 47.9
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 8.6e-23 114.0 106 58.5
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.7e-18 98.6 62 74.2
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 2.3e-15 89.4 968 20.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 3.9e-15 88.6 62 69.4
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.1e-14 87.0 57 68.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.9e-14 86.3 54 66.7
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.5e-14 85.9 87 54.0
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 3.4e-11 75.5 45 80.0
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 3.7e-10 72.0 92 42.4
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.9e-09 69.7 69 43.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.2e-09 68.9 99 37.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-09 68.9 68 50.0
Sopen07g031630 Solanum pennellii HOM05D004029 ORTHO05D004613 3.2e-09 68.9 54 61.1
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 3.9e-07 62.0 34 85.3
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.5e-06 59.3 37 70.3
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.3e-06 58.9 57 52.6


User provided reference genes

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