Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 3.9e-63 244.6 121 100.0
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 4.4e-54 214.5 107 98.1
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 8.0e-24 114.0 111 55.0
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 1.6e-16 89.7 106 48.1
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 1.9e-12 76.3 86 40.7
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 2.4e-12 75.9 96 42.7
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 7.1e-12 74.3 95 37.9
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 1.2e-11 73.6 95 40.0
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 2.7e-11 72.4 95 37.9
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 2.7e-11 72.4 95 37.9
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 2.7e-11 72.4 89 41.6
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 2.7e-11 72.4 95 36.8
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 6.0e-11 71.2 94 39.4
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 7.8e-11 70.9 95 36.8
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 7.8e-11 70.9 86 39.5
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 7.8e-11 70.9 89 40.4
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 1.7e-10 69.7 93 38.7
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 2.3e-10 69.3 95 37.9
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 2.3e-10 69.3 104 41.3
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 3.0e-10 68.9 93 39.8
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 3.0e-10 68.9 93 39.8
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 3.0e-10 68.9 91 39.6
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 3.0e-10 68.9 95 36.8
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 3.9e-10 68.6 88 37.5
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 3.9e-10 68.6 93 39.8
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 3.9e-10 68.6 95 36.8
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 5.1e-10 68.2 93 37.6
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 5.1e-10 68.2 91 38.5
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 8.6e-10 67.4 109 32.1
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 8.6e-10 67.4 93 38.7
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 1.1e-09 67.0 95 36.8
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 1.5e-09 66.6 96 38.5
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 1.9e-09 66.2 88 36.4
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 2.5e-09 65.9 105 36.2
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 2.5e-09 65.9 89 37.1
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 7.3e-09 64.3 92 43.5
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 7.3e-09 64.3 91 38.5
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 1.6e-08 63.2 89 36.0
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 1.6e-08 63.2 92 35.9
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.8e-08 62.4 91 38.5
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 4.7e-08 61.6 70 42.9
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 6.2e-08 61.2 91 38.5
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 8.1e-08 60.8 115 29.6
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 1.1e-07 60.5 87 41.4
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 1.1e-07 60.5 99 36.4
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 1.1e-07 60.5 95 34.7
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 1.1e-07 60.5 95 34.7
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 2.3e-07 59.3 88 37.5
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 3.1e-07 58.9 93 29.0
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 3.1e-07 58.9 83 36.1
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 4.0e-07 58.5 93 32.3
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 5.2e-07 58.2 93 34.4
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 8.9e-07 57.4 61 45.9
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 8.9e-07 57.4 84 36.9
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 1.2e-06 57.0 94 34.0
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 1.2e-06 57.0 95 33.7
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 1.5e-06 56.6 93 35.5
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 1.5e-06 56.6 65 38.5
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 2.0e-06 56.2 99 33.3
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 2.0e-06 56.2 29 69.0
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 2.6e-06 55.8 29 65.5
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 2.6e-06 55.8 29 65.5
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 2.6e-06 55.8 65 38.5
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 2.6e-06 55.8 99 34.3
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 3.4e-06 55.5 93 33.3
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 3.4e-06 55.5 94 33.0
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 3.4e-06 55.5 111 36.9
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 4.4e-06 55.1 29 65.5
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 4.4e-06 55.1 29 65.5
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 4.4e-06 55.1 39 51.3
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 4.4e-06 55.1 91 37.4
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 5.8e-06 54.7 66 42.4
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 5.8e-06 54.7 91 34.1


User provided reference genes

Program Settings