Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold76G25158 Striga asiatica HOM05D002727 ORTHO05D002856 4.8e-126 454.5 232 100.0
SGA_v2.0_scaffold44G16740 Striga asiatica HOM05D002727 ORTHO05D002856 1.4e-61 240.4 161 78.9
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 2.9e-30 136.3 82 86.6
SGA_v2.0_scaffold180G39653 Striga asiatica HOM05D000089 ORTHO05D000104 9.3e-29 131.3 83 83.1
SGA_v2.0_scaffold52G19078 Striga asiatica HOM05D002727 ORTHO05D002856 3.9e-27 125.9 82 84.1
SGA_v2.0_scaffold122G33196 Striga asiatica HOM05D002727 ORTHO05D002856 8.7e-27 124.8 73 89.0
SGA_v2.0_scaffold495G52461 Striga asiatica HOM05D002727 ORTHO05D002856 3.3e-26 122.9 83 80.7
SGA_v2.0_scaffold668G53415 Striga asiatica HOM05D002727 ORTHO05D002856 3.7e-25 119.4 77 83.1
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 3.1e-24 116.3 83 72.3
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 1.0e-22 111.3 63 92.1
SGA_v2.0_scaffold190G40405 Striga asiatica HOM05D002727 ORTHO05D002856 6.1e-20 102.1 62 85.5
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 5.1e-19 99.0 85 63.5
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 2.5e-18 96.7 83 61.4
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 2.5e-18 96.7 83 61.4
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 2.5e-18 96.7 83 61.4
SGA_v2.0_scaffold10G05490 Striga asiatica HOM05D002727 ORTHO05D002856 7.4e-18 95.1 61 82.0
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 3.7e-17 92.8 83 61.4
unitig_27.g25263 Utricularia gibba HOM05D002727 ORTHO05D002856 2.4e-16 90.1 81 59.3
SGA_v2.0_scaffold172G38950 Striga asiatica HOM05D002727 ORTHO05D002856 3.1e-16 89.7 55 85.5
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 5.3e-16 89.0 83 57.8
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 2.0e-15 87.0 83 57.8
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 7.2e-13 78.6 83 48.2
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 3.6e-12 76.3 82 50.0
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 4.7e-12 75.9 83 49.4
unitig_26.g9074 Utricularia gibba HOM05D002727 ORTHO05D002856 1.0e-11 74.7 78 53.8
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 1.4e-11 74.3 83 48.2
SGA_v2.0_scaffold85G26696 Striga asiatica HOM05D002727 ORTHO05D002856 2.3e-11 73.6 70 70.0
SGA_v2.0_scaffold410G51120 Striga asiatica HOM05D000788 ORTHO05D016013 3.0e-11 73.2 103 45.6
unitig_26.g9076 Utricularia gibba HOM05D002727 ORTHO05D002856 8.8e-11 71.6 81 50.6
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 2.6e-10 70.1 109 41.3
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 5.7e-10 68.9 82 46.3
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 5.7e-10 68.9 82 46.3
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 9.7e-10 68.2 83 44.6
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 1.3e-09 67.8 82 45.1
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 1.3e-09 67.8 82 43.9
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 2.2e-09 67.0 83 45.8
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 8.2e-09 65.1 82 45.1
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 8.2e-09 65.1 82 42.7
SGA_v2.0_scaffold130G34300 Striga asiatica HOM05D002076 ORTHO05D404172 8.2e-09 65.1 41 82.9
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.1e-08 64.7 82 43.9
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 1.4e-08 64.3 82 42.7
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.4e-08 64.3 81 45.7
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 1.4e-08 64.3 83 43.4
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 1.4e-08 64.3 81 43.2
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 1.8e-08 63.9 81 45.7
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.8e-08 63.9 82 45.1
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 2.4e-08 63.5 83 42.2
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 3.1e-08 63.2 82 42.7
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 5.3e-08 62.4 102 39.2
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 5.3e-08 62.4 102 36.3
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 5.3e-08 62.4 81 44.4
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 5.3e-08 62.4 82 42.7
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 7.0e-08 62.0 82 45.1
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 7.0e-08 62.0 83 44.6
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 7.0e-08 62.0 82 43.9
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 9.1e-08 61.6 82 43.9
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 9.1e-08 61.6 83 42.2
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 1.2e-07 61.2 82 41.5
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 1.2e-07 61.2 81 45.7
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 1.2e-07 61.2 83 43.4
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 1.2e-07 61.2 83 42.2
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 1.5e-07 60.8 83 43.4
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.5e-07 60.8 82 42.7
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.5e-07 60.8 85 37.6
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 1.5e-07 60.8 83 42.2
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 1.5e-07 60.8 85 43.5
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.5e-07 60.8 85 43.5
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 2.0e-07 60.5 86 46.5
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 2.0e-07 60.5 83 41.0
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-07 60.1 85 42.4
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 2.6e-07 60.1 86 43.0
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 3.4e-07 59.7 82 42.7
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 4.5e-07 59.3 82 42.7
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 4.5e-07 59.3 81 40.7
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 4.5e-07 59.3 82 42.7
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 4.5e-07 59.3 82 42.7
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 5.9e-07 58.9 84 40.5
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 5.9e-07 58.9 84 40.5
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 5.9e-07 58.9 84 40.5
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 5.9e-07 58.9 82 42.7
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 5.9e-07 58.9 82 43.9
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.9e-07 58.9 85 42.4
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 7.7e-07 58.5 82 41.5
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 7.7e-07 58.5 84 40.5
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-06 57.8 82 42.7
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 1.3e-06 57.8 83 39.8
Medtr4g084160 Medicago truncatula HOM05D002727 ORTHO05D002856 1.3e-06 57.8 82 41.5
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 1.3e-06 57.8 83 42.2
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 1.7e-06 57.4 84 38.1
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 1.7e-06 57.4 84 39.3
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 1.7e-06 57.4 83 43.4
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 1.7e-06 57.4 82 42.7
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-06 57.4 82 42.7
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 1.7e-06 57.4 86 45.3
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.7e-06 57.4 101 37.6
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 1.7e-06 57.4 83 43.4
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.2e-06 57.0 82 39.0
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-06 57.0 82 45.1
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 2.2e-06 57.0 85 42.4
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 2.9e-06 56.6 83 39.8
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 2.9e-06 56.6 82 39.0
AL7G48630 Arabidopsis lyrata HOM05D002727 ORTHO05D002856 5.0e-06 55.8 80 41.2
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 5.0e-06 55.8 82 36.6
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 6.5e-06 55.5 86 43.0
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 6.5e-06 55.5 83 37.3
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 6.5e-06 55.5 82 43.9
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.5e-06 55.5 82 42.7
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 6.5e-06 55.5 82 40.2
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 6.5e-06 55.5 84 39.3
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 8.5e-06 55.1 83 39.8
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 8.5e-06 55.1 82 37.8
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.5e-06 55.1 82 40.2
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.5e-06 55.1 82 40.2


User provided reference genes

Program Settings