Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold76G25113 Striga asiatica HOM05D003827 ORTHO05D004518 1.8e-120 436.0 233 100.0
SGA_v2.0_scaffold214G42261 Striga asiatica HOM05D003827 ORTHO05D004518 7.0e-16 88.6 103 53.4
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 6.1e-12 75.5 154 37.7
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 7.5e-10 68.6 148 36.5
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 9.7e-10 68.2 114 43.0
SGA_v2.0_scaffold502G52516 Striga asiatica HOM05D003827 ORTHO05D004518 9.7e-10 68.2 58 63.8
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 1.7e-09 67.4 58 65.5
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.7e-09 67.4 168 32.1
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.7e-09 67.4 157 35.7
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.7e-09 67.4 157 35.7
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.8e-09 66.6 52 61.5
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 4.8e-09 65.9 58 60.3
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 6.3e-09 65.5 62 56.5
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 8.2e-09 65.1 41 78.0
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 8.2e-09 65.1 41 78.0
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 8.2e-09 65.1 40 80.0
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 8.2e-09 65.1 40 80.0
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 8.2e-09 65.1 40 80.0
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 8.2e-09 65.1 40 80.0
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.2e-09 65.1 62 56.5
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 8.2e-09 65.1 42 76.2
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 8.2e-09 65.1 40 80.0
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.1e-08 64.7 40 80.0
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.4e-08 64.3 40 80.0
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-08 64.3 62 56.5
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.8e-08 63.9 40 77.5
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 1.8e-08 63.9 40 77.5
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 1.8e-08 63.9 42 73.8
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 1.8e-08 63.9 46 65.2
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 1.8e-08 63.9 46 65.2
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.8e-08 63.9 40 77.5
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 2.4e-08 63.5 44 70.5
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 2.4e-08 63.5 40 77.5
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 2.4e-08 63.5 60 56.7
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 2.4e-08 63.5 59 62.7
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.4e-08 63.5 40 77.5
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 3.1e-08 63.2 60 56.7
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 4.1e-08 62.8 49 67.3
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 4.1e-08 62.8 49 67.3
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.1e-08 62.8 42 71.4
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 4.1e-08 62.8 40 75.0
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 4.1e-08 62.8 40 77.5
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 4.1e-08 62.8 40 77.5
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 5.3e-08 62.4 40 75.0
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 5.3e-08 62.4 40 75.0
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 5.3e-08 62.4 40 75.0
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 5.3e-08 62.4 118 41.5
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 5.3e-08 62.4 62 58.1
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 5.3e-08 62.4 40 75.0
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 7.0e-08 62.0 39 76.9
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 7.0e-08 62.0 41 73.2
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 7.0e-08 62.0 40 72.5
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 7.0e-08 62.0 49 65.3
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 9.1e-08 61.6 36 80.6
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 9.1e-08 61.6 43 72.1
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 9.1e-08 61.6 41 73.2
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 9.1e-08 61.6 38 76.3
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 9.1e-08 61.6 42 71.4
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 9.1e-08 61.6 59 61.0
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 9.1e-08 61.6 107 40.2
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 9.1e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.2e-07 61.2 42 69.0
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 1.2e-07 61.2 40 72.5
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.2e-07 61.2 40 72.5
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 1.2e-07 61.2 41 75.6
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 1.2e-07 61.2 36 80.6
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 1.2e-07 61.2 40 72.5
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 1.2e-07 61.2 40 72.5
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 1.2e-07 61.2 40 72.5
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.2e-07 61.2 99 41.4
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 1.2e-07 61.2 41 75.6
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 1.6e-07 60.8 178 30.3
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 1.6e-07 60.8 36 80.6
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 1.6e-07 60.8 40 72.5
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 2.0e-07 60.5 104 37.5
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 2.0e-07 60.5 46 65.2
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 2.0e-07 60.5 36 80.6
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 2.0e-07 60.5 36 80.6
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 2.7e-07 60.1 42 69.0
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 2.7e-07 60.1 40 72.5
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 2.7e-07 60.1 39 74.4
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 2.7e-07 60.1 48 62.5
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.5e-07 59.7 45 66.7
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 3.5e-07 59.7 40 75.0
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 3.5e-07 59.7 41 70.7
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 3.5e-07 59.7 38 73.7
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 3.5e-07 59.7 36 77.8
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 4.5e-07 59.3 42 69.0
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 4.5e-07 59.3 42 71.4
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 5.9e-07 58.9 42 66.7
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 5.9e-07 58.9 36 77.8
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 5.9e-07 58.9 36 77.8
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 7.7e-07 58.5 40 70.0
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 1.0e-06 58.2 46 71.7
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.3e-06 57.8 40 72.5
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 1.3e-06 57.8 40 72.5
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.3e-06 57.8 39 71.8
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.3e-06 57.8 46 56.5
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 1.7e-06 57.4 40 67.5
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.7e-06 57.4 56 55.4
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.2e-06 57.0 36 72.2
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.2e-06 57.0 36 72.2
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 2.2e-06 57.0 126 36.5
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 2.9e-06 56.6 39 71.8
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 2.9e-06 56.6 49 63.3
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.9e-06 56.6 116 36.2
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 2.9e-06 56.6 37 70.3
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 3.8e-06 56.2 154 31.8
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 6.5e-06 55.5 106 36.8
Os11g0587300 Oryza sativa ssp. japonica HOM05D003827 ORTHO05D004518 6.5e-06 55.5 36 77.8
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 6.5e-06 55.5 56 53.6
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.5e-06 55.1 36 69.4
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 8.5e-06 55.1 46 60.9


User provided reference genes

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