Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 0.0e+00 1213.7 621 100.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.3e-207 726.9 649 58.4
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.2e-205 718.0 604 62.3
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.9e-198 696.4 642 58.3
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.9e-198 696.4 643 57.1
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 5.7e-198 694.9 631 58.5
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 3.1e-196 689.1 646 54.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.0e-194 684.1 620 56.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 3.6e-192 675.6 641 55.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 4.6e-192 675.2 638 54.9
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 7.9e-192 674.5 641 54.6
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 8.8e-191 671.0 643 54.1
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.5e-190 670.2 640 54.4
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.5e-190 669.5 642 53.9
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 5.7e-190 668.3 600 59.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.7e-190 668.3 643 54.4
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 9.1e-188 661.0 636 54.4
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.6e-187 659.4 653 54.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 4.5e-187 658.7 652 54.8
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 7.7e-187 657.9 640 54.7
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.0e-186 657.5 649 54.1
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 2.9e-186 656.0 644 53.0
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.1e-185 654.1 638 55.6
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.6e-184 650.2 650 55.4
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.7e-184 649.4 645 53.6
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 7.9e-184 647.9 634 56.3
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 7.9e-184 647.9 639 54.0
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 7.9e-184 647.9 684 51.0
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.4e-183 647.1 641 54.8
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.8e-183 646.7 628 53.8
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 5.1e-183 645.2 617 54.6
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 6.7e-183 644.8 646 55.0
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 8.8e-183 644.4 611 55.0
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.5e-182 643.7 564 59.2
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.5e-182 643.7 651 56.5
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.6e-182 642.9 643 53.5
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.2e-181 639.8 621 53.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.2e-181 639.8 640 52.0
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.2e-181 639.8 635 52.9
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.2e-181 639.8 612 53.4
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 3.7e-181 639.0 646 52.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 4.8e-181 638.6 638 52.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.8e-181 638.6 644 54.3
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.1e-180 637.5 622 56.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.4e-180 637.1 632 52.5
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.4e-180 637.1 645 52.1
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.8e-180 636.7 653 54.7
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.4e-180 636.3 636 52.5
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.1e-180 634.4 641 51.2
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 9.1e-180 634.4 642 55.6
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.2e-179 634.0 614 53.1
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.0e-179 633.3 645 51.5
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 7.7e-179 631.3 649 52.5
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.2e-178 629.8 611 54.3
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 2.2e-178 629.8 500 64.8
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.8e-178 629.0 647 54.7
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 8.5e-178 627.9 635 52.6
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 7.2e-177 624.8 647 55.3
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 9.4e-177 624.4 633 51.5
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.6e-176 622.5 648 53.1
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 3.6e-176 622.5 619 52.7
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 8.8e-175 617.8 638 53.0
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.4e-174 615.5 638 53.4
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.7e-174 614.4 687 48.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.3e-173 614.0 618 53.6
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.7e-173 612.5 660 50.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.1e-172 610.9 651 50.8
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 2.4e-172 609.8 641 51.2
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 9.1e-172 607.8 649 49.6
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.5e-169 600.5 643 50.7
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 7.2e-169 598.2 639 49.8
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 6.1e-168 595.1 647 49.8
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.8e-167 593.6 500 61.4
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.3e-167 593.2 655 49.8
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.0e-167 592.8 598 52.7
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.0e-167 592.8 644 51.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 4.0e-167 592.4 639 52.1
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 9.7e-166 587.8 639 49.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.7e-165 587.0 634 51.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.8e-164 583.6 631 51.0
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.2e-163 580.9 632 52.4
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.2e-163 580.9 559 54.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.5e-163 579.3 643 50.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.9e-163 578.6 645 48.5
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.1e-161 574.3 636 52.2
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.5e-161 573.9 623 49.6
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 4.7e-160 568.9 623 49.6
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 8.0e-160 568.2 585 53.0
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.8e-159 567.0 623 49.4
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 4.0e-159 565.8 607 51.6
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 4.0e-159 565.8 607 51.6
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.0e-159 565.8 634 50.3
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.2e-158 564.3 607 51.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 2.6e-158 563.1 607 52.6
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 9.8e-158 561.2 607 52.2
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 9.8e-158 561.2 607 52.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.8e-157 559.7 669 46.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 6.3e-157 558.5 630 49.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 6.3e-157 558.5 633 50.2
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.2e-155 554.3 561 52.0
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.6e-155 553.9 574 52.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.0e-154 551.2 637 49.3
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.9e-153 547.0 636 47.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.5e-153 545.4 709 45.1
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.1e-152 543.5 563 50.4
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 3.6e-152 542.7 622 49.0
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.0e-151 541.2 654 47.1
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.4e-150 536.2 565 50.4
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.3e-149 534.3 527 53.1
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.7e-149 532.7 617 48.5
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 8.3e-149 531.6 520 51.5
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.1e-148 531.2 599 47.2
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 9.2e-148 528.1 598 48.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.9e-146 523.1 591 48.7
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 8.6e-146 521.5 529 52.7
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 6.8e-143 511.9 686 44.9
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.7e-141 507.3 489 54.0
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 7.0e-140 501.9 572 49.0
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.0e-139 500.4 492 54.7
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 3.9e-138 496.1 518 50.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 3.3e-137 493.0 528 51.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.4e-135 487.6 484 54.1
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.1e-132 478.0 527 49.1
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.1e-132 476.1 623 43.2
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.5e-121 441.0 480 49.4
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.1e-119 433.3 422 52.6
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.5e-115 419.9 621 43.3
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.4e-111 407.9 620 39.0
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-111 407.9 462 46.8
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-111 407.9 462 46.8
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.5e-110 404.4 475 50.7
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.5e-110 404.4 590 39.3
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 9.9e-110 401.7 508 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.0e-106 391.7 509 44.8
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.9e-105 387.5 620 39.7
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.2e-102 378.3 482 46.1
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 9.9e-102 375.2 365 55.9
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.5e-73 280.8 535 35.1
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.3e-72 278.5 510 35.1
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.0e-55 219.5 361 38.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.9e-54 216.5 306 44.1
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 8.5e-53 212.6 416 31.5
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 5.4e-47 193.4 225 43.1
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.8e-45 187.2 149 61.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 6.2e-27 126.7 160 40.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 2.7e-22 111.3 64 79.7
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.2e-18 97.1 160 36.9
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 1.6e-11 75.5 127 40.2
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-08 64.3 46 63.0


User provided reference genes

Program Settings